6cyk: Difference between revisions
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<StructureSection load='6cyk' size='340' side='right'caption='[[6cyk]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='6cyk' size='340' side='right'caption='[[6cyk]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[6cyk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | <table><tr><td colspan='2'>[[6cyk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CYK FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cyk OCA], [https://pdbe.org/6cyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cyk RCSB], [https://www.ebi.ac.uk/pdbsum/6cyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cyk ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cyk OCA], [https://pdbe.org/6cyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cyk RCSB], [https://www.ebi.ac.uk/pdbsum/6cyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cyk ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Q9L5C8_ECOLX Q9L5C8_ECOLX] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Escherichia coli]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Brown | [[Category: Brown C]] | ||
[[Category: Hu | [[Category: Hu L]] | ||
[[Category: Palzkill | [[Category: Palzkill T]] | ||
[[Category: Patel | [[Category: Patel MP]] | ||
[[Category: Prasad | [[Category: Prasad BVV]] | ||
[[Category: Sankaran | [[Category: Sankaran B]] | ||
Latest revision as of 18:13, 4 October 2023
CTX-M-14 N106S mutantCTX-M-14 N106S mutant
Structural highlights
FunctionPublication Abstract from PubMedThe CTX-M beta-lactamases have emerged as the most widespread extended-spectrum beta-lactamases (ESBLs) in Gram-negative bacteria. These enzymes rapidly hydrolyze cefotaxime, but not the related cephalosporin, ceftazidime. ESBL variants have evolved, however, that provide enhanced ceftazidime resistance. We show here that a natural variant at a non-active site, second-shell residue, N106S, enhances enzyme stability, but reduces catalytic efficiency for cefotaxime and ceftazidime and decreases resistance levels. However, when the N106S variant was combined with an active-site variant, D240G, that enhances enzyme catalytic efficiency, but decreases stability, the resultant double mutant exhibited higher resistance levels than predicted on the basis of the phenotypes of each variant. We found that this epistasis is due to compensatory effects, whereby increased stability provided by N106S overrides its cost of decreased catalytic activity. X-ray structures of the variant enzymes in complex with cefotaxime revealed conformational changes in the active site loop spanning residues 103-106 that were caused by the N106S substitution and relieve steric strain to stabilize the enzyme, but also alter contacts with cefotaxime and thereby reduce catalytic activity. We noted that the 103-106 loop conformation in the N106S-containing variants is different from that of wild-type CTX-M, but nearly identical to that of the non-ESBL, TEM-1 beta-lactamase, having a serine at the 106 position. Therefore, residue 106 may serve as a "switch" that toggles the conformations of the 103-106 loop. When it is serine, the loop is in the non-ESBL, TEM-like conformation, and when it is asparagine, the loop is in a CTX-M-like, cefotaximase-favorable conformation. Synergistic effects of functionally distinct substitutions in beta-lactamase variants shed light on the evolution of bacterial drug resistance.,Patel MP, Hu L, Brown CA, Sun Z, Adamski CJ, Stojanoski V, Sankaran B, Prasad BVV, Palzkill T J Biol Chem. 2018 Oct 1. pii: RA118.003792. doi: 10.1074/jbc.RA118.003792. PMID:30275013[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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