5ui9: Difference between revisions

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<StructureSection load='5ui9' size='340' side='right'caption='[[5ui9]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
<StructureSection load='5ui9' size='340' side='right'caption='[[5ui9]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ui9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrrk Agrrk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UI9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5UI9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ui9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_radiobacter_K84 Agrobacterium radiobacter K84]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5UI9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5UI9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8A1:(2S)-2,3-DIHYDROXY-2-METHYLPROPANOIC+ACID'>8A1</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5uhw|5uhw]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8A1:(2S)-2,3-DIHYDROXY-2-METHYLPROPANOIC+ACID'>8A1</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Arad_9238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=311403 AGRRK])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ui9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ui9 OCA], [https://pdbe.org/5ui9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ui9 RCSB], [https://www.ebi.ac.uk/pdbsum/5ui9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ui9 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ui9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ui9 OCA], [http://pdbe.org/5ui9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ui9 RCSB], [http://www.ebi.ac.uk/pdbsum/5ui9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ui9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/APSD_AGRRK APSD_AGRRK] Involved in catabolism of D-apiose. Catalyzes oxidation of D-apiose to D-apionolactone.<ref>PMID:29867142</ref>
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Agrrk]]
[[Category: Agrobacterium radiobacter K84]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Almo, S C]]
[[Category: Almo SC]]
[[Category: Bonanno, J B]]
[[Category: Bonanno JB]]
[[Category: Cook, W J]]
[[Category: Cook WJ]]
[[Category: Fedorov, A A]]
[[Category: Fedorov AA]]
[[Category: Fedorov, E V]]
[[Category: Fedorov EV]]
[[Category: Gerlt, J A]]
[[Category: Gerlt JA]]
[[Category: Huang, H]]
[[Category: Huang H]]
[[Category: 2-hydroxy-2-hydroxymethyl propanoic acid]]
[[Category: Oxidoreductase]]

Latest revision as of 16:27, 4 October 2023

Crystal Structure of an Oxidoreductase from Agrobacterium radiobacter in Complex with NAD+, 2 -hydroxy-2-hydroxymethyl propanoic acid and MagnesiumCrystal Structure of an Oxidoreductase from Agrobacterium radiobacter in Complex with NAD+, 2 -hydroxy-2-hydroxymethyl propanoic acid and Magnesium

Structural highlights

5ui9 is a 2 chain structure with sequence from Agrobacterium radiobacter K84. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.92Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

APSD_AGRRK Involved in catabolism of D-apiose. Catalyzes oxidation of D-apiose to D-apionolactone.[1]

References

  1. ↑ Carter MS, Zhang X, Huang H, Bouvier JT, Francisco BS, Vetting MW, Al-Obaidi N, Bonanno JB, Ghosh A, Zallot RG, Andersen HM, Almo SC, Gerlt JA. Functional assignment of multiple catabolic pathways for D-apiose. Nat Chem Biol. 2018 Jul;14(7):696-705. doi: 10.1038/s41589-018-0067-7. Epub 2018 , Jun 4. PMID:29867142 doi:http://dx.doi.org/10.1038/s41589-018-0067-7

5ui9, resolution 1.92Å

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