5u0h: Difference between revisions
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<StructureSection load='5u0h' size='340' side='right'caption='[[5u0h]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='5u0h' size='340' side='right'caption='[[5u0h]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5u0h]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5u0h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobacillus_composti_KWC4 Thermobacillus composti KWC4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5U0H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5U0H FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5u0h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5u0h OCA], [https://pdbe.org/5u0h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5u0h RCSB], [https://www.ebi.ac.uk/pdbsum/5u0h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5u0h ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/A0A384E0U0_THECK A0A384E0U0_THECK] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: | [[Category: Thermobacillus composti KWC4]] | ||
[[Category: Adams | [[Category: Adams PD]] | ||
[[Category: Ellinghaus | [[Category: Ellinghaus TL]] | ||
[[Category: McAndrew | [[Category: McAndrew RP]] | ||
[[Category: Pereira | [[Category: Pereira JH]] | ||
[[Category: Welner | [[Category: Welner DH]] | ||
Latest revision as of 16:17, 4 October 2023
Crystal structure of GH family 9 endoglucanase J30Crystal structure of GH family 9 endoglucanase J30
Structural highlights
FunctionPublication Abstract from PubMedThe development of robust enzymes, in particular cellulases, is a key step in the success of biological routes to `second-generation' biofuels. The typical sources of the enzymes used to degrade biomass include mesophilic and thermophilic organisms. The endoglucanase J30 from glycoside hydrolase family 9 was originally identified through metagenomic analyses of compost-derived bacterial consortia. These studies, which were tailored to favor growth on targeted feedstocks, have already been shown to identify cellulases with considerable thermal tolerance. The amino-acid sequence of J30 shows comparably low identity to those of previously analyzed enzymes. As an enzyme that combines a well measurable activity with a relatively low optimal temperature (50 degrees C) and a modest thermal tolerance, it offers the potential for structural optimization aimed at increased stability. Here, the crystal structure of wild-type J30 is presented along with that of a designed triple-mutant variant with improved characteristics for industrial applications. Through the introduction of a structural Zn(2+) site, the thermal tolerance was increased by more than 10 degrees C and was paralleled by an increase in the catalytic optimum temperature by more than 5 degrees C. Engineering glycoside hydrolase stability by the introduction of zinc binding.,Ellinghaus TL, Pereira JH, McAndrew RP, Welner DH, DeGiovanni AM, Guenther JM, Tran HM, Feldman T, Simmons BA, Sale KL, Adams PD Acta Crystallogr D Struct Biol. 2018 Jul 1;74(Pt 7):702-710. doi:, 10.1107/S2059798318006678. Epub 2018 Jun 27. PMID:29968680[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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