2xo0: Difference between revisions
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<StructureSection load='2xo0' size='340' side='right'caption='[[2xo0]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='2xo0' size='340' side='right'caption='[[2xo0]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2xo0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XO0 FirstGlance]. <br> | <table><tr><td colspan='2'>[[2xo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XO0 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=ZZS:1,3,5-TRIAZINE-2,4-DIAMINE'>ZZS</scene | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=ZZS:1,3,5-TRIAZINE-2,4-DIAMINE'>ZZS</scene></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xo0 OCA], [https://pdbe.org/2xo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xo0 RCSB], [https://www.ebi.ac.uk/pdbsum/2xo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xo0 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xo0 OCA], [https://pdbe.org/2xo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xo0 RCSB], [https://www.ebi.ac.uk/pdbsum/2xo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xo0 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Bacillus subtilis]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Batey | [[Category: Batey RT]] | ||
[[Category: Brenk | [[Category: Brenk R]] | ||
[[Category: Daldrop | [[Category: Daldrop P]] | ||
[[Category: Hammond | [[Category: Hammond CM]] | ||
[[Category: Lilley | [[Category: Lilley DMJ]] | ||
[[Category: Reyes | [[Category: Reyes FE]] | ||
[[Category: Robinson | [[Category: Robinson DA]] | ||
Latest revision as of 21:45, 20 September 2023
xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screeningxpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening
Structural highlights
Publication Abstract from PubMedThe increasing number of RNA crystal structures enables a structure-based approach to the discovery of new RNA-binding ligands. To develop the poorly explored area of RNA-ligand docking, we have conducted a virtual screening exercise for a purine riboswitch to probe the strengths and weaknesses of RNA-ligand docking. Using a standard protein-ligand docking program with only minor modifications, four new ligands with binding affinities in the micromolar range were identified, including two compounds based on molecular scaffolds not resembling known ligands. RNA-ligand docking performed comparably to protein-ligand docking indicating that this approach is a promising option to explore the wealth of RNA structures for structure-based ligand design. Novel Ligands for a Purine Riboswitch Discovered by RNA-Ligand Docking.,Daldrop P, Reyes FE, Robinson DA, Hammond CM, Lilley DM, Batey RT, Brenk R Chem Biol. 2011 Mar 25;18(3):324-35. PMID:21439477[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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