5j6f: Difference between revisions
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
<StructureSection load='5j6f' size='340' side='right'caption='[[5j6f]], [[Resolution|resolution]] 2.75Å' scene=''> | <StructureSection load='5j6f' size='340' side='right'caption='[[5j6f]], [[Resolution|resolution]] 2.75Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5j6f]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6F OCA]. For a <b>guided tour on the structure components</b> use [ | <table><tr><td colspan='2'>[[5j6f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_sp._GHH01 Geobacillus sp. GHH01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J6F FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRE:PREPHENIC+ACID'>PRE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75Å</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PRE:PREPHENIC+ACID'>PRE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j6f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6f OCA], [https://pdbe.org/5j6f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j6f RCSB], [https://www.ebi.ac.uk/pdbsum/5j6f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6f ProSAT]</span></td></tr> | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/L8A208_9BACI L8A208_9BACI] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 20: | Line 23: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Geobacillus sp. GHH01]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Allison | [[Category: Allison TM]] | ||
[[Category: Arcus | [[Category: Arcus VL]] | ||
[[Category: Bai | [[Category: Bai Y]] | ||
[[Category: Lang | [[Category: Lang EJM]] | ||
[[Category: Nazmi | [[Category: Nazmi AR]] | ||
[[Category: Othman | [[Category: Othman M]] | ||
[[Category: Panjkar | [[Category: Panjkar S]] | ||
[[Category: Parker | [[Category: Parker EJ]] | ||
Latest revision as of 13:51, 6 September 2023
Crystal structure of DAH7PS-CM complex from Geobacillus sp. with prephenateCrystal structure of DAH7PS-CM complex from Geobacillus sp. with prephenate
Structural highlights
FunctionPublication Abstract from PubMedMultifunctional proteins play a variety of roles in metabolism. Here we examine the catalytic function of the combined 3-deoxy-D-arabino heptulosonate 7-phosphate synthase (DAH7PS) and chorismate mutase (CM) from Geobacillus sp. DAH7PS operates at the start of the biosynthetic pathway for aromatic metabolites, whereas CM operates in a dedicated branch of the pathway for the biosynthesis of amino acids tyrosine and phenylalanine. In line with sequence predictions the two catalytic functions are located in distinct domains and these two activities can be separated and retain functionality. For the full-length protein, prephenate, the product of the CM reaction, acts as an allosteric inhibitor for the DAH7PS. The crystal structure of the full-length protein with prephenate bound and the accompanying small angle X-ray scattering data reveal the molecular mechanism of the allostery. Prephenate binding results in the tighter association between the dimeric CM domains and the tetrameric DAH7PS, occluding the active site and therefore disrupting DAH7PS function. Acquisition of a physical gating mechanism to control catalytic function through gene fusion appears to be a general mechanism for providing allostery for this enzyme. Interdomain Conformational Changes Provide Allosteric Regulation En Route To Chorismate.,Nazmi AR, Lang EJ, Bai Y, Allison TM, Othman MH, Panjikar S, Arcus VL, Parker EJ J Biol Chem. 2016 Aug 8. pii: jbc.M116.741637. PMID:27502275[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
|
| ||||||||||||||||||