5j62: Difference between revisions
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==FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291== | ==FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291== | ||
<StructureSection load='5j62' size='340' side='right' caption='[[5j62]], [[Resolution|resolution]] 2.15Å' scene=''> | <StructureSection load='5j62' size='340' side='right'caption='[[5j62]], [[Resolution|resolution]] 2.15Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5j62]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[5j62]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_R20291 Clostridioides difficile R20291]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J62 FirstGlance]. <br> | ||
</td></tr><tr id=' | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15Å</td></tr> | ||
<tr id=' | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
< | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j62 OCA], [https://pdbe.org/5j62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j62 RCSB], [https://www.ebi.ac.uk/pdbsum/5j62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j62 ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Clostridioides difficile | [[Category: Clostridioides difficile R20291]] | ||
[[Category: Hessami | [[Category: Large Structures]] | ||
[[Category: Karr | [[Category: Hessami N]] | ||
[[Category: Najar | [[Category: Karr EA]] | ||
[[Category: Powell | [[Category: Najar FZ]] | ||
[[Category: Richter-Addo | [[Category: Powell SM]] | ||
[[Category: Thomas | [[Category: Richter-Addo GB]] | ||
[[Category: Wang | [[Category: Thomas LM]] | ||
[[Category: West | [[Category: Wang B]] | ||
[[Category: West AH]] | |||
Latest revision as of 13:50, 6 September 2023
FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291FMN-dependent Nitroreductase (CDR20291_0684) from Clostridium difficile R20291
Structural highlights
Publication Abstract from PubMedNitroreductases (NRs) are flavin mononucleotide (FMN)-dependent enzymes that catalyze the biotransformation of organic nitro compounds (RNO2; R = alkyl, aryl) to the nitroso RN = O, hydroxylamino RNHOH, or amine RNH2 derivatives. Metronidazole (Mtz) is a nitro-containing antibiotic that is commonly prescribed for lower-gut infections caused by the anaerobic bacterium Clostridium difficile. C. difficile infections rank number one among hospital acquired infections, and can result in diarrhea, severe colitis, or even death. Although NRs have been implicated in Mtz resistance of C. difficile, no NRs have been characterized from the hypervirulent R20291 strain of C. difficile. We report the first expression, purification, and three-dimensional X-ray crystal structures of two NRs from the C. difficile R20291 strain. The X-ray crystal structures of the two NRs were solved to 2.1 A resolution. Their homodimeric structures exhibit the classic NR alpha+beta fold, with each protomer binding one FMN cofactor near the dimer interface. Functional assays demonstrate that these two NRs metabolize Mtz with associated re-oxidation of the proteins. Importantly, these results represent the first isolation and characterization of NRs from the hypervirulent R20291 strain of relevance to organic RNO2 (e.g., Mtz) metabolism. Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole.,Wang B, Powell SM, Hessami N, Najar FZ, Thomas LM, Karr EA, West AH, Richter-Addo GB Nitric Oxide. 2016 Sep 10. pii: S1089-8603(16)30090-8. doi:, 10.1016/j.niox.2016.09.003. PMID:27623089[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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