3mea: Difference between revisions

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OCA

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 ==Crystal structure of the SGF29 in complex with H3K4me3==
-<StructureSection load='3mea' size='340' side='right' caption='[[3mea]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
+<StructureSection load='3mea' size='340' side='right'caption='[[3mea]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3mea]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MEA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MEA FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3mea]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Xenopus_laevis Xenopus laevis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MEA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MEA FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3me9|3me9]], [[3met|3met]], [[3meu|3meu]], [[3mev|3mev]], [[3mew|3mew]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M3L:N-TRIMETHYLLYSINE'>M3L</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CCDC101, SGF29 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mea OCA], [https://pdbe.org/3mea PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mea RCSB], [https://www.ebi.ac.uk/pdbsum/3mea PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mea ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mea OCA], [http://pdbe.org/3mea PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mea RCSB], [http://www.ebi.ac.uk/pdbsum/3mea PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mea ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/SGF29_HUMAN SGF29_HUMAN]] Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.<ref>PMID:19103755</ref>
+[https://www.uniprot.org/uniprot/SGF29_HUMAN SGF29_HUMAN] Involved in transcriptional regulation, through association with histone acetyltransferase (HAT) SAGA-type complexes like the TFTC-HAT, ATAC or STAGA complexes. Specifically recognizes and binds methylated 'Lys-4' of histone H3 (H3K4me), with a preference for trimethylated form (H3K4me3). In the SAGA-type complexes, required to recruit complexes to H3K4me. May be involved in MYC-mediated oncogenic transformation.<ref>PMID:19103755</ref>
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
    <jmolCheckbox>
-     <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/me/3mea_consurf.spt"</scriptWhenChecked>
+     <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/me/3mea_consurf.spt"</scriptWhenChecked>
      <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
      <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 37: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Arrowsmith, C H]]
+[[Category: Large Structures]]
-[[Category: Bian, C]]
+[[Category: Xenopus laevis]]
-[[Category: Bochkarev, A]]
+[[Category: Arrowsmith CH]]
-[[Category: Bountra, C]]
+[[Category: Bian C]]
-[[Category: Edwards, A M]]
+[[Category: Bochkarev A]]
-[[Category: MacKenzie, F]]
+[[Category: Bountra C]]
-[[Category: Min, J]]
+[[Category: Edwards AM]]
-[[Category: Structural genomic]]
+[[Category: MacKenzie F]]
-[[Category: Tempel, W]]
+[[Category: Min J]]
-[[Category: Weigelt, J]]
+[[Category: Tempel W]]
-[[Category: Xu, C]]
+[[Category: Weigelt J]]
-[[Category: Chromosomal protein]]
+[[Category: Xu C]]
-[[Category: Dna-binding]]
-[[Category: Nucleosome core]]
-[[Category: Nucleus]]
-[[Category: Sgc]]
-[[Category: Transcription]]
-[[Category: Transcription regulation]]