2dpu: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
Line 3: Line 3:
<StructureSection load='2dpu' size='340' side='right'caption='[[2dpu]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
<StructureSection load='2dpu' size='340' side='right'caption='[[2dpu]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2dpu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPU FirstGlance]. <br>
<table><tr><td colspan='2'>[[2dpu]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DPU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DPU FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bm9|1bm9]], [[1j0r|1j0r]], [[1f4k|1f4k]], [[2dpd|2dpd]]</div></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rtp ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpu OCA], [https://pdbe.org/2dpu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpu RCSB], [https://www.ebi.ac.uk/pdbsum/2dpu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpu ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dpu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dpu OCA], [https://pdbe.org/2dpu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dpu RCSB], [https://www.ebi.ac.uk/pdbsum/2dpu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dpu ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/RTP_BACSU RTP_BACSU]] Plays a role in DNA replication and termination (fork arrest mechanism). Two dimers of rtp bind to the two inverted repeat regions (IRI and IRII) present in the termination site. The binding of each dimer is centered on an 8 bp direct repeat.  
[https://www.uniprot.org/uniprot/RTP_BACSU RTP_BACSU] Plays a role in DNA replication and termination (fork arrest mechanism). Two dimers of rtp bind to the two inverted repeat regions (IRI and IRII) present in the termination site. The binding of each dimer is centered on an 8 bp direct repeat.


==See Also==
==See Also==
Line 15: Line 14:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Bacillus subtilis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Vivian, J P]]
[[Category: Vivian JP]]
[[Category: Wilce, J]]
[[Category: Wilce J]]
[[Category: Wilce, M C.J]]
[[Category: Wilce MCJ]]
[[Category: Dna binding protein-dna complex]]
[[Category: Dna replication]]
[[Category: Protein-dna complex]]
[[Category: Winged-helix]]

Latest revision as of 13:34, 16 August 2023

Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNACrystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA

Structural highlights

2dpu is a 3 chain structure with sequence from Bacillus subtilis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 3.1Å
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RTP_BACSU Plays a role in DNA replication and termination (fork arrest mechanism). Two dimers of rtp bind to the two inverted repeat regions (IRI and IRII) present in the termination site. The binding of each dimer is centered on an 8 bp direct repeat.

See Also

2dpu, resolution 3.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA