5f6r: Difference between revisions

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 ==Co-crystal Structure of 3-hydroxydecanoyl-(acyl carrier protein) Dehydratase from Yersinia pestis with 5-Benzoylpentanoic Acid==
-<StructureSection load='5f6r' size='340' side='right' caption='[[5f6r]], [[Resolution|resolution]] 1.18&Aring;' scene=''>
+<StructureSection load='5f6r' size='340' side='right'caption='[[5f6r]], [[Resolution|resolution]] 1.18&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5f6r]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5F6R FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5f6r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F6R FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5VO:6-OXIDANYLIDENE-6-PHENYL-HEXANOIC+ACID'>5VO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.179&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3q62|3q62]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5VO:6-OXIDANYLIDENE-6-PHENYL-HEXANOIC+ACID'>5VO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fabA, AK38_1122 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6r OCA], [https://pdbe.org/5f6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f6r RCSB], [https://www.ebi.ac.uk/pdbsum/5f6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6r ProSAT]</span></td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-hydroxyacyl-[acyl-carrier-protein]_dehydratase 3-hydroxyacyl-[acyl-carrier-protein] dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.59 4.2.1.59] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5f6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f6r OCA], [http://pdbe.org/5f6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5f6r RCSB], [http://www.ebi.ac.uk/pdbsum/5f6r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5f6r ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/A0A0B6NZG1_YERPE A0A0B6NZG1_YERPE]] Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length (By similarity).[SAAS:SAAS00370957]
+[https://www.uniprot.org/uniprot/FABA_YERPE FABA_YERPE] Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E-(2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.[HAMAP-Rule:MF_00405]
 __TOC__
 </StructureSection>
-[[Category: Yersinia pestis co92]]
+[[Category: Large Structures]]
-[[Category: Anderson, W F]]
+[[Category: Yersinia pestis CO92]]
-[[Category: Structural genomic]]
+[[Category: Anderson WF]]
-[[Category: Joachimiak, A]]
+[[Category: Joachimiak A]]
-[[Category: Kim, Y]]
+[[Category: Kim Y]]
-[[Category: Kwon, K]]
+[[Category: Kwon K]]
-[[Category: Maltseva, N]]
+[[Category: Maltseva N]]
-[[Category: Zhang, R]]
+[[Category: Zhang R]]
-[[Category: Alpha-beta fold]]
-[[Category: Csgid]]
-[[Category: Lyase]]