5edn: Difference between revisions

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OCA

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 ==Structure of HOXB13-DNA(TCG) complex==
-<StructureSection load='5edn' size='340' side='right' caption='[[5edn]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+<StructureSection load='5edn' size='340' side='right'caption='[[5edn]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5edn]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EDN FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5edn]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EDN FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HOXB13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5edn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5edn OCA], [http://pdbe.org/5edn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5edn RCSB], [http://www.ebi.ac.uk/pdbsum/5edn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5edn ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5edn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5edn OCA], [https://pdbe.org/5edn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5edn RCSB], [https://www.ebi.ac.uk/pdbsum/5edn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5edn ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/HXB13_HUMAN HXB13_HUMAN]] Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
+[https://www.uniprot.org/uniprot/HXB13_HUMAN HXB13_HUMAN] Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 26: / Line 26: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Jolma, A]]
+[[Category: Large Structures]]
-[[Category: Morgunova, E]]
+[[Category: Synthetic construct]]
-[[Category: Popov, A]]
+[[Category: Jolma A]]
-[[Category: Taipale, J]]
+[[Category: Morgunova E]]
-[[Category: Yin, Y]]
+[[Category: Popov A]]
-[[Category: Complex]]
+[[Category: Taipale J]]
-[[Category: Dna]]
+[[Category: Yin Y]]
-[[Category: Transcription]]
-[[Category: Transcription factor]]