5dl9: Difference between revisions

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==Structure of Tetragonal Lysozyme in complex with Iodine solved by UWO Students==
==Structure of Tetragonal Lysozyme in complex with Iodine solved by UWO Students==
<StructureSection load='5dl9' size='340' side='right' caption='[[5dl9]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
<StructureSection load='5dl9' size='340' side='right'caption='[[5dl9]], [[Resolution|resolution]] 1.38&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5dl9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chick Chick]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DL9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DL9 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5dl9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DL9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DL9 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38&#8491;</td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dla|5dla]]</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LYZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9031 CHICK])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dl9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dl9 OCA], [https://pdbe.org/5dl9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dl9 RCSB], [https://www.ebi.ac.uk/pdbsum/5dl9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dl9 ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dl9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dl9 OCA], [http://pdbe.org/5dl9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dl9 RCSB], [http://www.ebi.ac.uk/pdbsum/5dl9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dl9 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>  
 
==See Also==
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Chick]]
[[Category: Gallus gallus]]
[[Category: Lysozyme]]
[[Category: Large Structures]]
[[Category: Bednarski, R]]
[[Category: Bednarski R]]
[[Category: Bianchetti, C M]]
[[Category: Bianchetti CM]]
[[Category: Cirricione, N]]
[[Category: Cirricione N]]
[[Category: Greco, A]]
[[Category: Greco A]]
[[Category: Hodgson, R]]
[[Category: Hodgson R]]
[[Category: Kent, S]]
[[Category: Kent S]]
[[Category: McGowan, J]]
[[Category: McGowan J]]
[[Category: Notherm, B]]
[[Category: Notherm B]]
[[Category: Patt, M]]
[[Category: Patt M]]
[[Category: Vue, L]]
[[Category: Vue L]]
[[Category: Enzyme]]
[[Category: Glycoside hydrolase]]
[[Category: Hydrolase]]

Latest revision as of 00:47, 29 June 2023

Structure of Tetragonal Lysozyme in complex with Iodine solved by UWO StudentsStructure of Tetragonal Lysozyme in complex with Iodine solved by UWO Students

Structural highlights

5dl9 is a 1 chain structure with sequence from Gallus gallus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.38Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

LYSC_CHICK Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.[1]

See Also

References

  1. ↑ Maehashi K, Matano M, Irisawa T, Uchino M, Kashiwagi Y, Watanabe T. Molecular characterization of goose- and chicken-type lysozymes in emu (Dromaius novaehollandiae): evidence for extremely low lysozyme levels in emu egg white. Gene. 2012 Jan 15;492(1):244-9. doi: 10.1016/j.gene.2011.10.021. Epub 2011 Oct, 25. PMID:22044478 doi:10.1016/j.gene.2011.10.021

5dl9, resolution 1.38Å

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