Lysin: Difference between revisions

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== 3D structure of lysin ==
== 3D structure of lysin ==
[[Lysin 3D structures]]
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}



Revision as of 13:32, 18 June 2023

Function

Lysin (Lys) is a protein which cleaves cell walls. Egg Lysin, a protein from abalone sperm, creates a hole in the envelope of the egg, permitting the sperm to pass through the envelope and fuse with the egg.

Structural highlights

The structure of lysin, refined at 1.9 angstroms resolution, reveals an alpha-helical, amphipathic molecule. . you can see the alpha helixes in pink. exhibits three features: two tracks of basic residues that span the length of the molecule, a solvent-exposed cluster of ,(in green) and an extended amino-terminal hypervariable domain that is species-specific. The structure suggests possible mechanisms of action[1].

3D structure of lysin

Lysin 3D structures

Updated on 30-May-2025

1lis, 1lyn, 2lis, 2lyn, 3lyn, 5ii7, 5ii8, 5ii9 – aLys - abalone

5utg – aLys (mutant)
5iia, 5iib, 5mr3 – aLys + vitelline envelope sperm lysin receptor
1nkl – NK-Lys – pig – NMR
4cvd – Lys – bacteriophage CP-7
6ilu – Lys – bacteriophage PBC5
5kgr, 6ist, 6l00 – EpLys – Enterococcus phage IMEEF1
5jgr, 7dws – T4Lys – Enterobacteria phage T4
4w51, 4w52, 4w53, 4w54, 4w55, 4w56, 4w57, 4w58, 4w59, 5jgn, 5jgt, 5jgu, 5jgv, 5jgx, 5jgz, 5lwo, 5nx0 – T4Lys (mutant)
5g27, 5jws, 5jwt, 5jwu, 5jwv, 5jww – T4Lys (mutant) + azaborine
1h09 – bLys – bacteriophage CP-1
1oba – bLys + choline
2ixu – bLys + peptidoglycan analog
2ixv, 2j8f, 2j8g – bLys (mutant) + peptidoglycan analog
5khz, 5vnq, 6ph0, 6ph1, 6u0b, 6u0c, 6u0e, 6u0f, 6v51, 7m5i – EcLys – E. coli phage
5ki1, 5ki2, 5ki3, 5ki8, 5kig, 5kii, 5kim, 5kio, 5xpe, 6pgy, 6pgz – EcLys (mutant)
6akv – Lys – B. cereus phage
6fhg – Lys – Thermus phage
7kwt, 7kww, 7kwy – PLyCB (mutant) – Streptococcus phage
7aqh – PLyCB cell wall-binding domain
6yj1 – PLyCB peptidase domain
4jz5 – Ply40 catalytic domain – Listeria phage
4krt – Lys – Clostridium phage
2mk5 – GH15Lys residues 368-495 – phage GH15 – NMR
4olk – GH15Lys CHAP domain residues 1-165
4ols – GH15Lys amidase domain residues 165-403

Abalone lysin (PDB code 1lis)

Drag the structure with the mouse to rotate

ReferencesReferences

  1. Shaw A, McRee DE, Vacquier VD, Stout CD. The crystal structure of lysin, a fertilization protein. Science. 1993 Dec 17;262(5141):1864-7. PMID:8266073

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Carmit Ginesin, Michal Harel, Jaime Prilusky, Alexander Berchansky, Joel L. Sussman