4zdo: Difference between revisions

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<StructureSection load='4zdo' size='340' side='right'caption='[[4zdo]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
<StructureSection load='4zdo' size='340' side='right'caption='[[4zdo]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4zdo]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZDO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ZDO FirstGlance]. <br>
<table><tr><td colspan='2'>[[4zdo]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4ZDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4ZDO FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PLR:(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL+DIHYDROGEN+PHOSPHATE'>PLR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLR:(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL+DIHYDROGEN+PHOSPHATE'>PLR</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3hl2|3hl2]], [[4zdl|4zdl]], [[4zdp|4zdp]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4zdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zdo OCA], [https://pdbe.org/4zdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4zdo RCSB], [https://www.ebi.ac.uk/pdbsum/4zdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4zdo ProSAT]</span></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SEPSECS, TRNP48 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/O-phospho-L-seryl-tRNA(Sec):L-selenocysteinyl-tRNA_synthase O-phospho-L-seryl-tRNA(Sec):L-selenocysteinyl-tRNA synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.9.1.2 2.9.1.2] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4zdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4zdo OCA], [http://pdbe.org/4zdo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4zdo RCSB], [http://www.ebi.ac.uk/pdbsum/4zdo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4zdo ProSAT]</span></td></tr>
</table>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SPCS_HUMAN SPCS_HUMAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: French, R L]]
[[Category: French RL]]
[[Category: Simonovic, M]]
[[Category: Simonovic M]]
[[Category: Mutation]]
[[Category: Pyridoxal phosphate]]
[[Category: Selenocysteine]]
[[Category: Transferase-rna complex]]
[[Category: Trna]]

Revision as of 10:50, 10 May 2023

The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)The crystal structure of T325S mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)

Structural highlights

4zdo is a 5 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SPCS_HUMAN

Publication Abstract from PubMed

Selenocysteine synthase (SepSecS) catalyzes the terminal reaction of selenocysteine, and is vital for human selenoproteome integrity. Autosomal recessive inheritance of mutations in SepSecS-Ala239Thr, Thr325Ser, Tyr334Cys and Tyr429*-induced severe, early-onset, neurological disorders in distinct human populations. Although harboring different mutant alleles, patients presented remarkably similar phenotypes typified by cerebellar and cerebral atrophy, seizures, irritability, ataxia, and extreme spasticity. However, it has remained unclear how these genetic alterations affected the structure of SepSecS and subsequently elicited the development of a neurological pathology. Herein, our biophysical and structural characterization demonstrates that, with the exception of Tyr429*, pathogenic mutations decrease protein stability and trigger protein misfolding. We propose that the reduced stability and increased propensity towards misfolding are the main causes for the loss of SepSecS activity in afflicted patients, and that these factors contribute to disease progression. We also suggest that misfolding of enzymes regulating protein synthesis should be considered in the diagnosis and study of childhood neurological disorders.

Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase.,Puppala AK, French RL, Matthies D, Baxa U, Subramaniam S, Simonovic M Sci Rep. 2016 Aug 31;6:32563. doi: 10.1038/srep32563. PMID:27576344[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Puppala AK, French RL, Matthies D, Baxa U, Subramaniam S, Simonovic M. Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase. Sci Rep. 2016 Aug 31;6:32563. doi: 10.1038/srep32563. PMID:27576344 doi:http://dx.doi.org/10.1038/srep32563

4zdo, resolution 2.65Å

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