2my1: Difference between revisions

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==Solution structure of Bud31p==
==Solution structure of Bud31p==
<StructureSection load='2my1' size='340' side='right'caption='[[2my1]], [[NMR_Ensembles_of_Models | 35 NMR models]]' scene=''>
<StructureSection load='2my1' size='340' side='right'caption='[[2my1]]' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2my1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MY1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2my1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2MY1 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BUD31, CWC14, YCR063W, YCR63W, YCR903 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2my1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2my1 OCA], [https://pdbe.org/2my1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2my1 RCSB], [https://www.ebi.ac.uk/pdbsum/2my1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2my1 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2my1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2my1 OCA], [https://pdbe.org/2my1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2my1 RCSB], [https://www.ebi.ac.uk/pdbsum/2my1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2my1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
[[https://www.uniprot.org/uniprot/BUD31_YEAST BUD31_YEAST]] Involved in pre-mRNA splicing. Important for bud site selection.  
[https://www.uniprot.org/uniprot/BUD31_YEAST BUD31_YEAST] Involved in pre-mRNA splicing. Important for bud site selection.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Baker's yeast]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Bermel, W]]
[[Category: Saccharomyces cerevisiae S288C]]
[[Category: Mathieu, D]]
[[Category: Bermel W]]
[[Category: Nagai, K]]
[[Category: Mathieu D]]
[[Category: Neuhaus, D]]
[[Category: Nagai K]]
[[Category: Roon, A M.van]]
[[Category: Neuhaus D]]
[[Category: Yang, J]]
[[Category: Yang J]]
[[Category: Splicing]]
[[Category: Van Roon AM]]
[[Category: Splicing protein]]
[[Category: Zinc cluster]]
[[Category: Zinc finger]]

Revision as of 11:10, 8 March 2023

Solution structure of Bud31pSolution structure of Bud31p

Structural highlights

2my1 is a 1 chain structure with sequence from Saccharomyces cerevisiae S288C. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BUD31_YEAST Involved in pre-mRNA splicing. Important for bud site selection.

Publication Abstract from PubMed

Establishing the binding topology of structural zinc ions in proteins is an essential part of their structure determination by NMR spectroscopy. Using 113 Cd NMR experiments with 113 Cd-substituted samples is a useful approach but has previously been limited mainly to very small protein domains. Here we used 113 Cd NMR spectroscopy during structure determination of Bud31p, a 157-residue yeast protein containing an unusual Zn3 Cys9 cluster, demonstrating that recent hardware developments make this approach feasible for significantly larger systems.

Cd NMR Experiments Reveal an Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein Bud31p.,van Roon AM, Yang JC, Mathieu D, Bermel W, Nagai K, Neuhaus D Angew Chem Int Ed Engl. 2015 Feb 20. doi: 10.1002/anie.201412210. PMID:25703931[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. van Roon AM, Yang JC, Mathieu D, Bermel W, Nagai K, Neuhaus D. Cd NMR Experiments Reveal an Unusual Metal Cluster in the Solution Structure of the Yeast Splicing Protein Bud31p. Angew Chem Int Ed Engl. 2015 Feb 20. doi: 10.1002/anie.201412210. PMID:25703931 doi:http://dx.doi.org/10.1002/anie.201412210
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