4q4h: Difference between revisions
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==TM287/288 in its apo state== | ==TM287/288 in its apo state== | ||
<StructureSection load='4q4h' size='340' side='right' caption='[[4q4h]], [[Resolution|resolution]] 2.53Å' scene=''> | <StructureSection load='4q4h' size='340' side='right'caption='[[4q4h]], [[Resolution|resolution]] 2.53Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4q4h]] is a 2 chain structure with sequence from [ | <table><tr><td colspan='2'>[[4q4h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Q4H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Q4H FirstGlance]. <br> | ||
</td></tr> | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4q4h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4q4h OCA], [https://pdbe.org/4q4h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4q4h RCSB], [https://www.ebi.ac.uk/pdbsum/4q4h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4q4h ProSAT]</span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | |||
</table> | </table> | ||
== Function == | |||
[https://www.uniprot.org/uniprot/Y288_THEMA Y288_THEMA] | |||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: | [[Category: Thermotoga maritima MSB8]] | ||
[[Category: | [[Category: Gruetter MG]] | ||
[[Category: | [[Category: Hohl M]] | ||
[[Category: | [[Category: Seeger MA]] | ||
Revision as of 10:43, 8 February 2023
TM287/288 in its apo stateTM287/288 in its apo state
Structural highlights
FunctionPublication Abstract from PubMedATP binding cassette (ABC) transporters mediate vital transport processes in every living cell. ATP hydrolysis, which fuels transport, displays positive cooperativity in numerous ABC transporters. In particular, heterodimeric ABC exporters exhibit pronounced allosteric coupling between a catalytically impaired degenerate site, where nucleotides bind tightly, and a consensus site, at which ATP is hydrolyzed in every transport cycle. Whereas the functional phenomenon of cooperativity is well described, its structural basis remains poorly understood. Here, we present the apo structure of the heterodimeric ABC exporter TM287/288 and compare it to the previously solved structure with adenosine 5'-(beta,gamma-imido)triphosphate (AMP-PNP) bound at the degenerate site. In contrast to other ABC exporter structures, the nucleotide binding domains (NBDs) of TM287/288 remain in molecular contact even in the absence of nucleotides, and the arrangement of the transmembrane domains (TMDs) is not influenced by AMP-PNP binding, a notion confirmed by double electron-electron resonance (DEER) measurements. Nucleotide binding at the degenerate site results in structural rearrangements, which are transmitted to the consensus site via two D-loops located at the NBD interface. These loops owe their name from a highly conserved aspartate and are directly connected to the catalytically important Walker B motif. The D-loop at the degenerate site ties the NBDs together even in the absence of nucleotides and substitution of its aspartate by alanine is well-tolerated. By contrast, the D-loop of the consensus site is flexible and the aspartate to alanine mutation and conformational restriction by cross-linking strongly reduces ATP hydrolysis and substrate transport. Structural basis for allosteric cross-talk between the asymmetric nucleotide binding sites of a heterodimeric ABC exporter.,Hohl M, Hurlimann LM, Bohm S, Schoppe J, Grutter MG, Bordignon E, Seeger MA Proc Natl Acad Sci U S A. 2014 Jul 29;111(30):11025-30. doi:, 10.1073/pnas.1400485111. Epub 2014 Jul 16. PMID:25030449[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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