DNA ligase 3D structures: Difference between revisions
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Michal Harel (talk | contribs) No edit summary |
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**[[4d05]] – LigD + AMP - ''Psychromonas'' <br /> | **[[4d05]] – LigD + AMP - ''Psychromonas'' <br /> | ||
**[[6nhx]], [[6nhz]] – MtLigD D + ATP - ''Mycobacterium tuberculosis'' <br /> | **[[6nhx]], [[6nhz]] – MtLigD D + ATP - ''Mycobacterium tuberculosis'' <br /> | ||
**[[2iru]] – MtLigD D polymerase domain 1-300 <br /> | |||
**[[2irx]], [[2iry]] – MtLigD D polymerase domain + GTP <br /> | |||
**[[3pky]] – MtLigD D polymerase domain + DNA + UTP <br /> | |||
**[[2r9l]], [[4mky]] – MtLigD D polymerase domain + DNA <br /> | |||
**[[6rar]], [[6ras]], [[6rce]] - PmLigD + CMP + AMP – ''Prochlorococcus marinus''<br /> | **[[6rar]], [[6ras]], [[6rce]] - PmLigD + CMP + AMP – ''Prochlorococcus marinus''<br /> | ||
**[[6rau]] - PmLigD + AMP <br /> | **[[6rau]] - PmLigD + AMP <br /> | ||
**[[7obn]] - LigD + AMP + CMP + DNA – ''Burkholderia pseudomallei<''br /> | |||
*NAD+-dependent LigD | *NAD+-dependent LigD | ||
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**[[6kjm]], [[6krh]] – MtLigD A + AMP + nicotinamide ribose-MP<br /> | **[[6kjm]], [[6krh]] – MtLigD A + AMP + nicotinamide ribose-MP<br /> | ||
**[[6kkv]], [[6lw8]]– MtLigD A + inhibitor<br /> | **[[6kkv]], [[6lw8]]– MtLigD A + inhibitor<br /> | ||
**[[6ksd]] - MtLigD (mutant) + nicotinamide mononucleotide<br /> | |||
**[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br /> | **[[6kdu]] - MtLigD (mutant) + AMP + nicotinamide mononucleotide<br /> | ||
**[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br /> | **[[1v9p]], [[1dgs]] – LigD – ''Thermos filiformis''<br /> | ||
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**[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br /> | **[[1x9n]] – hLigD I + DNA + AMP + CMP – human<br /> | ||
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]], [[7kr3]], [[7kr4]] - hLigD I + DNA + AMP<br /> | **[[8b8t]] - hLigD I + PCNA – Cryo EM<br /> | ||
**[[7qnz]] - hLigD I + PCNA + DNA – Cryo EM<br /> | |||
**[[7qo1]] - hLigD I + PCNA + FEN1 + DNA – Cryo EM<br /> | |||
**[[6p09]], [[6p0a]], [[6p0b]], [[6p0c]], [[6p0d]], [[7kr3]], [[7kr4]], [[7sx5]], [[7sxe]], [[7sum]] - hLigD I + DNA + AMP<br /> | |||
**[[6p0e]], [[6q1v]], [[7l34]], [[7l35]] - hLigD I (mutant) + DNA + AMP<br /> | **[[6p0e]], [[6q1v]], [[7l34]], [[7l35]] - hLigD I (mutant) + DNA + AMP<br /> | ||
**[[2od8]] – LigD I residues 32-53 + PCNA | **[[2od8]] – LigD I residues 32-53 + PCNA | ||
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**[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br /> | **[[3w1b]], [[3w1g]] - hLigD IV adenylation and DNA-binding domains + artemis protein peptide<br /> | ||
**[[6bkg]], [[6bkf]] - hLigD IV catalytic domain + DNA + AMP<br /> | **[[6bkg]], [[6bkf]] - hLigD IV catalytic domain + DNA + AMP<br /> | ||
**[[7lsy]], [[7lt3]] - hLigD IV in NHEJ short-range synaptic complex – Cryo EM<br /> | **[[7lsy]], [[7lt3]], [[7nfc]], [[7nfe]] - hLigD IV in NHEJ short-range synaptic complex – Cryo EM<br /> | ||
**[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br /> | **[[1z56]] – LigD IV + ligase interacting factor 1 - yeast<br /> | ||