1ilx: Difference between revisions

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<table><tr><td colspan='2'>[[1ilx]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ILX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ILX FirstGlance]. <br>
<table><tr><td colspan='2'>[[1ilx]] is a 18 chain structure with sequence from [https://en.wikipedia.org/wiki/Synechococcus_elongatus Synechococcus elongatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ILX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ILX FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1fe1|1fe1]]</div></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ilx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ilx OCA], [https://pdbe.org/1ilx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ilx RCSB], [https://www.ebi.ac.uk/pdbsum/1ilx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ilx ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ilx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ilx OCA], [https://pdbe.org/1ilx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ilx RCSB], [https://www.ebi.ac.uk/pdbsum/1ilx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ilx ProSAT]</span></td></tr>
</table>
</table>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Synechococcus elongatus]]
[[Category: Synechococcus elongatus]]
[[Category: Bruce, D]]
[[Category: Bruce D]]
[[Category: Orth, P]]
[[Category: Orth P]]
[[Category: Owens, T G]]
[[Category: Owens TG]]
[[Category: Vasilev, S]]
[[Category: Vasilev S]]
[[Category: Zouni, A]]
[[Category: Zouni A]]
[[Category: Antenna chlorophyll]]
[[Category: Exitation transfer]]
[[Category: Photosynthesis]]

Revision as of 11:06, 11 January 2023

Excited State Dynamics in Photosystem II Revised. New Insights from the X-ray Structure.Excited State Dynamics in Photosystem II Revised. New Insights from the X-ray Structure.

Structural highlights

1ilx is a 18 chain structure with sequence from Synechococcus elongatus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The heart of oxygenic photosynthesis is photosystem II (PSII), a multisubunit protein complex that uses solar energy to drive the splitting of water and production of molecular oxygen. The effectiveness of the photochemical reaction center of PSII depends on the efficient transfer of excitation energy from the surrounding antenna chlorophylls. A kinetic model for PSII, based on the x-ray crystal structure coordinates of 37 antenna and reaction center pigment molecules, allows us to map the major energy transfer routes from the antenna chlorophylls to the reaction center chromophores. The model shows that energy transfer to the reaction center is slow compared with the rate of primary electron transport and depends on a few bridging chlorophyll molecules. This unexpected energetic isolation of the reaction center in PSII is similar to that found in the bacterial photosystem, conflicts with the established view of the photophysics of PSII, and may be a functional requirement for primary photochemistry in photosynthesis. In addition, the model predicts a value for the intrinsic photochemical rate constant that is 4 times that found in bacterial reaction centers.

Excited-state dynamics in photosystem II: insights from the x-ray crystal structure.,Vasil'ev S, Orth P, Zouni A, Owens TG, Bruce D Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8602-7. PMID:11459991[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Vasil'ev S, Orth P, Zouni A, Owens TG, Bruce D. Excited-state dynamics in photosystem II: insights from the x-ray crystal structure. Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8602-7. PMID:11459991 doi:10.1073/pnas.141239598

1ilx, resolution 3.80Å

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OCA