4m3x: Difference between revisions

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 ==RB69 DNA polymerase ternary complex with dT/dG at position n-5 of primer/template duplex==
-<StructureSection load='4m3x' size='340' side='right' caption='[[4m3x]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+<StructureSection load='4m3x' size='340' side='right'caption='[[4m3x]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4m3x]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpr69 Bpr69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M3X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M3X FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4m3x]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M3X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M3X FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4m3r|4m3r]], [[4m3t|4m3t]], [[4m3u|4m3u]], [[4m3w|4m3w]], [[4m3y|4m3y]], [[4m3z|4m3z]], [[4m41|4m41]], [[4m42|4m42]], [[4m45|4m45]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m3x OCA], [https://pdbe.org/4m3x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m3x RCSB], [https://www.ebi.ac.uk/pdbsum/4m3x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m3x ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">43 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12353 BPR69])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA-directed_DNA_polymerase DNA-directed DNA polymerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.7 2.7.7.7] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m3x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m3x OCA], [http://pdbe.org/4m3x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m3x RCSB], [http://www.ebi.ac.uk/pdbsum/4m3x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m3x ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
+[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 18: @@
 </div>
 <div class="pdbe-citations 4m3x" style="background-color:#fffaf0;"></div>
-==See Also==
-*[[DNA polymerase|DNA polymerase]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bpr69]]
+[[Category: Escherichia phage RB69]]
-[[Category: DNA-directed DNA polymerase]]
+[[Category: Large Structures]]
-[[Category: Konigsberg, W H]]
+[[Category: Konigsberg WH]]
-[[Category: Xia, S]]
+[[Category: Xia S]]
-[[Category: Dt/dg]]
-[[Category: Hydrolase-dna complex]]
-[[Category: N-5]]
-[[Category: Quadruple]]
-[[Category: Rb69]]
-[[Category: Rb69 pol]]