4m1e: Difference between revisions

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 ==Crystal structure of purine nucleoside phosphorylase I from Planctomyces limnophilus DSM 3776, NYSGRC Target 029364.==
-<StructureSection load='4m1e' size='340' side='right' caption='[[4m1e]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+<StructureSection load='4m1e' size='340' side='right'caption='[[4m1e]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4m1e]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Plal2 Plal2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1E OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4M1E FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4m1e]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Planctopirus_limnophila_DSM_3776 Planctopirus limnophila DSM 3776]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4M1E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4M1E FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PC:PYRIDINE-2-CARBOXYLIC+ACID'>6PC</scene>, <scene name='pdbligand=ADE:ADENINE'>ADE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1e OCA], [https://pdbe.org/4m1e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4m1e RCSB], [https://www.ebi.ac.uk/pdbsum/4m1e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4m1e ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Plim_2216 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=521674 PLAL2])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Purine-nucleoside_phosphorylase Purine-nucleoside phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.1 2.4.2.1] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4m1e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4m1e OCA], [http://pdbe.org/4m1e PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4m1e RCSB], [http://www.ebi.ac.uk/pdbsum/4m1e PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4m1e ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/D5SMY7_PLAL2 D5SMY7_PLAL2]] The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate (By similarity).[PIRNR:PIRNR000477]
+[https://www.uniprot.org/uniprot/D5SMY7_PLAL2 D5SMY7_PLAL2] The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate (By similarity).[PIRNR:PIRNR000477]
 ==See Also==
-*[[Purine nucleoside phosphorylase|Purine nucleoside phosphorylase]]
+*[[Purine nucleoside phosphorylase 3D structures|Purine nucleoside phosphorylase 3D structures]]
 __TOC__
 </StructureSection>
-[[Category: Plal2]]
+[[Category: Large Structures]]
-[[Category: Purine-nucleoside phosphorylase]]
+[[Category: Planctopirus limnophila DSM 3776]]
-[[Category: Almo, S C]]
+[[Category: Almo SC]]
-[[Category: Bhosle, R]]
+[[Category: Bhosle R]]
-[[Category: Bonanno, J B]]
+[[Category: Bonanno JB]]
-[[Category: Celikgil, A]]
+[[Category: Celikgil A]]
-[[Category: Chamala, S]]
+[[Category: Chamala S]]
-[[Category: Chan, M K]]
+[[Category: Chan MK]]
-[[Category: Evans, B]]
+[[Category: Evans B]]
-[[Category: Fiser, A]]
+[[Category: Fiser A]]
-[[Category: Garforth, S]]
+[[Category: Garforth S]]
-[[Category: Gizzi, A]]
+[[Category: Gizzi A]]
-[[Category: Hillerich, B]]
+[[Category: Hillerich B]]
-[[Category: Kar, A]]
+[[Category: Kar A]]
-[[Category: Khafizov, K]]
+[[Category: Khafizov K]]
-[[Category: Lafluer, J]]
+[[Category: Lafluer J]]
-[[Category: Lim, S]]
+[[Category: Lim S]]
-[[Category: Love, J]]
+[[Category: Love J]]
-[[Category: Malashkevich, V N]]
+[[Category: Malashkevich VN]]
-[[Category: Matikainen, B]]
+[[Category: Matikainen B]]
-[[Category: Structural genomic]]
+[[Category: Patel H]]
-[[Category: Patel, H]]
+[[Category: Seidel R]]
-[[Category: Seidel, R]]
+[[Category: Toro R]]
-[[Category: Toro, R]]
+[[Category: Villegas G]]
-[[Category: Villegas, G]]
-[[Category: Nysgrc]]
-[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-biology]]
-[[Category: Purine nucleoside phosphorylase]]
-[[Category: Transferase]]