1bkv: Difference between revisions

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== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1bkv]] is a 3 chain structure. The April 2000 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Collagen''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2000_4 10.2210/rcsb_pdb/mom_2000_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BKV FirstGlance]. <br>
<table><tr><td colspan='2'>[[1bkv]] is a 3 chain structure. The April 2000 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Collagen''  by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2000_4 10.2210/rcsb_pdb/mom_2000_4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BKV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BKV FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bkv OCA], [https://pdbe.org/1bkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bkv RCSB], [https://www.ebi.ac.uk/pdbsum/1bkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bkv ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bkv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bkv OCA], [https://pdbe.org/1bkv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bkv RCSB], [https://www.ebi.ac.uk/pdbsum/1bkv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bkv ProSAT]</span></td></tr>
</table>
</table>
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[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: Bella, J]]
[[Category: Bella J]]
[[Category: Berman, H M]]
[[Category: Berman HM]]
[[Category: Brodsky, B]]
[[Category: Brodsky B]]
[[Category: Kramer, R Z]]
[[Category: Kramer RZ]]
[[Category: Mayville, P]]
[[Category: Mayville P]]
[[Category: Hydrogen bonding]]
[[Category: Hydroxyproline]]
[[Category: Structural protein]]
[[Category: Triple helix]]
[[Category: Type iii collagen]]

Revision as of 14:19, 30 November 2022

COLLAGENCOLLAGEN

Structural highlights

1bkv is a 3 chain structure. The April 2000 RCSB PDB Molecule of the Month feature on Collagen by David S. Goodsell is 10.2210/rcsb_pdb/mom_2000_4. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The 2 A crystal structure reported here of the collagen-like model peptide, T3-785, provides the first visualization of how the sequence of collagen defines distinctive local conformational variations in triple-helical structure.

Sequence dependent conformational variations of collagen triple-helical structure.,Kramer RZ, Bella J, Mayville P, Brodsky B, Berman HM Nat Struct Biol. 1999 May;6(5):454-7. PMID:10331873[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Kramer RZ, Bella J, Mayville P, Brodsky B, Berman HM. Sequence dependent conformational variations of collagen triple-helical structure. Nat Struct Biol. 1999 May;6(5):454-7. PMID:10331873 doi:10.1038/8259

1bkv, resolution 2.00Å

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OCA