4f6m: Difference between revisions

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 ==Crystal structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA==
-<StructureSection load='4f6m' size='340' side='right' caption='[[4f6m]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+<StructureSection load='4f6m' size='340' side='right'caption='[[4f6m]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4f6m]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F6M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4F6M FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4f6m]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4F6M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4F6M FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4f6n|4f6n]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4f6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f6m OCA], [https://pdbe.org/4f6m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4f6m RCSB], [https://www.ebi.ac.uk/pdbsum/4f6m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4f6m ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ZBTB33, KAISO, ZNF348 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4f6m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4f6m OCA], [http://pdbe.org/4f6m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4f6m RCSB], [http://www.ebi.ac.uk/pdbsum/4f6m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4f6m ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/KAISO_HUMAN KAISO_HUMAN]] Transcriptional regulator with bimodal DNA-binding specificity. Binds to methylated CpG dinucleotides in the consensus sequence 5'-CGCG-3' and also binds to the non-methylated consensus sequence 5'-CTGCNA-3'. Recruits the N-CoR repressor complex to promote histone deacetylation and the formation of repressive chromatin structures in target gene promoters. May contribute to the repression of target genes of the Wnt signaling pathway. May also activate transcription of a subset of target genes by the recruitment of CTNND2.<ref>PMID:11445535</ref> <ref>PMID:14527417</ref> <ref>PMID:15548582</ref> <ref>PMID:15817151</ref>
+[https://www.uniprot.org/uniprot/KAISO_HUMAN KAISO_HUMAN] Transcriptional regulator with bimodal DNA-binding specificity. Binds to methylated CpG dinucleotides in the consensus sequence 5'-CGCG-3' and also binds to the non-methylated consensus sequence 5'-CTGCNA-3'. Recruits the N-CoR repressor complex to promote histone deacetylation and the formation of repressive chromatin structures in target gene promoters. May contribute to the repression of target genes of the Wnt signaling pathway. May also activate transcription of a subset of target genes by the recruitment of CTNND2.<ref>PMID:11445535</ref> <ref>PMID:14527417</ref> <ref>PMID:15548582</ref> <ref>PMID:15817151</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 24: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Buck-Koehntop, B A]]
+[[Category: Large Structures]]
-[[Category: Dyson, H J]]
+[[Category: Buck-Koehntop BA]]
-[[Category: Ekiert, D C]]
+[[Category: Dyson HJ]]
-[[Category: Martinez-Yamout, M A]]
+[[Category: Ekiert DC]]
-[[Category: Stanfield, R L]]
+[[Category: Martinez-Yamout MA]]
-[[Category: Wilson, I A]]
+[[Category: Stanfield RL]]
-[[Category: Wright, P E]]
+[[Category: Wilson IA]]
-[[Category: Dna]]
+[[Category: Wright PE]]
-[[Category: Dna binding]]
-[[Category: Dna binding protein-dna complex]]
-[[Category: Double helix]]
-[[Category: Protein-dna complex]]
-[[Category: Zinc finger]]