4edv: Difference between revisions

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 ==The structure of the S. aureus DnaG RNA Polymerase Domain bound to pppGpp and Manganese==
-<StructureSection load='4edv' size='340' side='right' caption='[[4edv]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
+<StructureSection load='4edv' size='340' side='right'caption='[[4edv]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4edv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EDV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4EDV FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4edv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4EDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4EDV FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0O2:GUANOSINE+5-(TETRAHYDROGEN+TRIPHOSPHATE)+3-(TRIHYDROGEN+DIPHOSPHATE)'>0O2</scene>, <scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0O2:GUANOSINE+5-(TETRAHYDROGEN+TRIPHOSPHATE)+3-(TRIHYDROGEN+DIPHOSPHATE)'>0O2</scene>, <scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4e2k|4e2k]], [[4ee1|4ee1]], [[4edz|4edz]], [[4edy|4edy]], [[4edt|4edt]], [[4edr|4edr]]</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4edv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4edv OCA], [https://pdbe.org/4edv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4edv RCSB], [https://www.ebi.ac.uk/pdbsum/4edv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4edv ProSAT]</span></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dnaG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4edv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4edv OCA], [http://pdbe.org/4edv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4edv RCSB], [http://www.ebi.ac.uk/pdbsum/4edv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4edv ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/PRIM_STAAU PRIM_STAAU]] DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis.
+[[https://www.uniprot.org/uniprot/DNAG_STAAU DNAG_STAAU]] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 20: @@
 ==See Also==
-*[[RNA polymerase|RNA polymerase]]
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Berger, J M]]
+[[Category: Large Structures]]
-[[Category: Chu, C]]
+[[Category: Staphylococcus aureus]]
-[[Category: Corn, J E]]
+[[Category: Berger JM]]
-[[Category: Rymer, R U]]
+[[Category: Chu C]]
-[[Category: Solorio, F A]]
+[[Category: Corn JE]]
-[[Category: Wang, J D]]
+[[Category: Rymer RU]]
-[[Category: Bacterial]]
+[[Category: Solorio FA]]
-[[Category: Catalytic domain]]
+[[Category: Wang JD]]
-[[Category: Nucleoside polyphosphate]]
-[[Category: Nucleoside triphosphate]]
-[[Category: Nucleotide]]
-[[Category: Protein-ligand complex]]
-[[Category: Transferase]]
-[[Category: Transferase-transferase inhibitor complex]]