4de2: Difference between revisions

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 ==CTX-M-9 class A beta-lactamase complexed with compound 12==
-<StructureSection load='4de2' size='340' side='right' caption='[[4de2]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
+<StructureSection load='4de2' size='340' side='right'caption='[[4de2]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4de2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DE2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DE2 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4de2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DE2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DE2 FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=DN3:3-[(DIMETHYLAMINO)METHYL]-N-[3-(1H-TETRAZOL-5-YL)PHENYL]BENZAMIDE'>DN3</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=DN3:3-[(DIMETHYLAMINO)METHYL]-N-[3-(1H-TETRAZOL-5-YL)PHENYL]BENZAMIDE'>DN3</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4de2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4de2 OCA], [https://pdbe.org/4de2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4de2 RCSB], [https://www.ebi.ac.uk/pdbsum/4de2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4de2 ProSAT]</span></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3g2y|3g2y]], [[3g2z|3g2z]], [[3g30|3g30]], [[3g31|3g31]], [[3g32|3g32]], [[3g35|3g35]], [[4dds|4dds]], [[4ddy|4ddy]], [[4de0|4de0]], [[4de1|4de1]], [[4de3|4de3]]</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">blaCTX-M-9, blaCTX-M-9a, blaCTX-M-9b, CTX-M ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4de2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4de2 OCA], [http://pdbe.org/4de2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4de2 RCSB], [http://www.ebi.ac.uk/pdbsum/4de2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4de2 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[[https://www.uniprot.org/uniprot/Q9L5C8_ECOLX Q9L5C8_ECOLX]]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 20: @@
 ==See Also==
-*[[Beta-lactamase|Beta-lactamase]]
+*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bacillus coli migula 1895]]
+[[Category: Escherichia coli]]
-[[Category: Beta-lactamase]]
+[[Category: Large Structures]]
-[[Category: Chen, Y]]
+[[Category: Chen Y]]
-[[Category: Nichols, D A]]
+[[Category: Nichols DA]]
-[[Category: Ctx-m]]
-[[Category: Fragment]]
-[[Category: Hydrolase-hydrolase inhibitor complex]]
-[[Category: Molecular docking]]