4bvo: Difference between revisions

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<StructureSection load='4bvo' size='340' side='right'caption='[[4bvo]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='4bvo' size='340' side='right'caption='[[4bvo]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4bvo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33152 Atcc 33152]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BVO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4BVO FirstGlance]. <br>
<table><tr><td colspan='2'>[[4bvo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila Legionella pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4BVO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4BVO FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E43:12-POLYTUNGSTATE'>E43</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E43:12-POLYTUNGSTATE'>E43</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4bvp|4bvp]]</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4bvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bvo OCA], [https://pdbe.org/4bvo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4bvo RCSB], [https://www.ebi.ac.uk/pdbsum/4bvo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4bvo ProSAT]</span></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Apyrase Apyrase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.5 3.6.1.5] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4bvo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4bvo OCA], [http://pdbe.org/4bvo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4bvo RCSB], [http://www.ebi.ac.uk/pdbsum/4bvo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4bvo ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
== Function ==
== Publication Abstract from PubMed ==
[[https://www.uniprot.org/uniprot/Q5ZUA2_LEGPH Q5ZUA2_LEGPH]]
Nucleoside triphosphate diphosphohydrolases (NTPDases) are secreted or membrane-bound ectonucleotidases that hydrolyze the anhydride bonds of nucleoside triphosphates and nucleoside diphosphates. Mammalian cell-surface NTPDase enzymes are inhibited by various polyoxometallates. Here, the structures of NTPDase1 from the bacterium Legionella pneumophila (LpNTPDase1) in complex with the dodecatungstate POM-1, decavanadate and octamolybdate/heptamolybdate are described. The metal clusters are bound at different sites but always in a highly ordered fashion via electrostatic interactions and hydrogen bonds. For octamolybdate, covalent interactions after oxygen ligand exchange by a serine and histidine side chain are also observed. The potential inhibitory mechanism and the use of the metal clusters as phasing tools for new NTPDase structures are discussed. The binding mode of a tartrate ion at the catalytic centre suggests novel strategies for the structure-based design of NTPDase inhibitors, and the observation of the enzyme in an intermediate open state contributes to our understanding of NTPDase enzyme dynamics.
 
Structures of Legionella pneumophila NTPDase1 in complex with polyoxometallates.,Zebisch M, Krauss M, Schafer P, Strater N Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):1147-54. doi:, 10.1107/S1399004714001916. Epub 2014 Mar 21. PMID:24699658<ref>PMID:24699658</ref>
 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 4bvo" style="background-color:#fffaf0;"></div>


==See Also==
==See Also==
*[[Ectonucleoside triphosphate diphosphohydrolase|Ectonucleoside triphosphate diphosphohydrolase]]
*[[Ectonucleoside triphosphate diphosphohydrolase|Ectonucleoside triphosphate diphosphohydrolase]]
== References ==
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Apyrase]]
[[Category: Atcc 33152]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Schaefer, P]]
[[Category: Legionella pneumophila]]
[[Category: Straeter, N]]
[[Category: Schaefer P]]
[[Category: Zebisch, M]]
[[Category: Straeter N]]
[[Category: Atpase]]
[[Category: Zebisch M]]
[[Category: Hydrolase]]
[[Category: Keggin]]
[[Category: Metal cluster]]
[[Category: Purinergic signalling]]
[[Category: Twinning]]

Latest revision as of 20:11, 7 September 2022

Legionella pneumophila NTPDase1 crystal form VI (part-open) in complex with polytungstate POM-1Legionella pneumophila NTPDase1 crystal form VI (part-open) in complex with polytungstate POM-1

Structural highlights

4bvo is a 1 chain structure with sequence from Legionella pneumophila. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[Q5ZUA2_LEGPH]

See Also

4bvo, resolution 1.70Å

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