User:Eric Martz/Sandbox 18: Difference between revisions
Jump to navigation
Jump to search
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
||
| Line 1: | Line 1: | ||
<StructureSection load='' size='350' side='right' caption='' scene=''> | <StructureSection load='' size='350' side='right' caption='' scene=''> | ||
When the original PDB file contains ligand hetero atoms, the script from FirstGlance | |||
FIRST TRY | |||
This scene was saved after dropping into the SAT JSmol a script from FirstGlance modified with this command: | |||
<pre> | |||
load "" FILTER "*.CA;biomolecule 1;bmchains;/=3" | |||
</pre> | |||
The scene renders perfectly in the SAT JSmol, rendering 20,358 alpha carbons. But when saved and played back from this green link | |||
<scene name='91/918475/6bp8/1'>Vault eukaryotic nanocompartment</scene> | <scene name='91/918475/6bp8/1'>Vault eukaryotic nanocompartment</scene> | ||
only the asymmetric unit (6,157 nonH atoms, 782 alpha carbons) loads. It fails to render, but spacefill shows it. The FILTER in the load command has been ignored. JSmol reports an error with either "load . FILTER ..." or "load FILTER ...". | |||
</StructureSection> | </StructureSection> | ||
Revision as of 21:40, 28 July 2022
When the original PDB file contains ligand hetero atoms, the script from FirstGlance FIRST TRY This scene was saved after dropping into the SAT JSmol a script from FirstGlance modified with this command: load "" FILTER "*.CA;biomolecule 1;bmchains;/=3" The scene renders perfectly in the SAT JSmol, rendering 20,358 alpha carbons. But when saved and played back from this green link only the asymmetric unit (6,157 nonH atoms, 782 alpha carbons) loads. It fails to render, but spacefill shows it. The FILTER in the load command has been ignored. JSmol reports an error with either "load . FILTER ..." or "load FILTER ...".
|
| ||||||||||