User:Eric Martz/Sandbox 4: Difference between revisions
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Filters "*.CA;biomolecule 1;" and "/=5" work in JSmol 14.31.8. Filter "bmchains" is ignored, so all copies of chain "1" are also named "1". This does not matter. | Filters "*.CA;biomolecule 1;" and "/=5" work in JSmol 14.31.8. Filter "bmchains" is ignored, so all copies of chain "1" are also named "1". This does not matter. | ||
As long as the atomindex values generated in 14.31.8 match those generated in 14.32.64, the script works. | As long as the atomindex values generated in 14.31.8 match those generated in 14.32.64, the script works. The script does not work if ligand HETATM are present in the AU because new JSmol includes them in BU1 while old JSmol does not. Therefore the scene must be generated in FirstGlance from an AU PDB file from which ligand HETATM have been deleted, and that PDB file must be uploaded for use by Proteopedia, e.g. 6mx4-nohet.pdb.gz. | ||
TEST OF NOHET SOLUTION | |||
<jmol> | |||
<jmolLink> | |||
<script> | |||
script /wiki/images/e/ee/Echo-loading.spt; | |||
script /wiki/images/6/6c/6mx4-nohet-distance.spt; | |||
spin on; | |||
</script> | |||
<text>6MX4 capsid colored by distance</text> | |||
</jmolLink> | |||
</jmol> | |||
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