User:Eric Martz/Sandbox 4: Difference between revisions
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<scene name='85/859610/1ijw/2'>Scene of 1ijwd with red words in caption</scene>. | <scene name='85/859610/1ijw/2'>Scene of 1ijwd with red words in caption</scene>. | ||
<scene name='85/859610/1sva_half_capsid/1'>Half Capsid as Scene</scene> | <scene name='85/859610/1sva_half_capsid/1'>Half Capsid as Scene</scene> Echos 1SVA but no atoms appear. Loads only 15K atoms instead of 24K. | ||
</StructureSection> | </StructureSection> | ||
Revision as of 23:29, 25 July 2022
Running State ScriptThis green link is a <jmolLink> that directly loads an uploaded script (a modified state script). When the script is dropped into Jmol.jar 14.31.8 (current main version in Proteopedia) it works (3 unrecognized but harmless set commands) even though the script was written from JSmol 14.32.64.
The load command in the script loads a "frozen" uploaded PDB file File:1sva-revdat2009.pdb.gz.
JSmol VersionThe state script was generated by JSmol 14.32.64. The load command in the script includes FILTER "*.CA;biomolecule 1;bmchains;/=5". Filters "*.CA;biomolecule 1;" and "/=5" work in JSmol 14.31.8. Filter "bmchains" is ignored, so all copies of chain "1" are also named "1". This does not matter. As long as the atomindex values generated in 14.31.8 match those generated in 14.32.64, the script works.
Saved ScenesFAILS BECAUSE CAPTION CONTAINS SEMICOLON: : Scene created by dropping half-capsid-nodata.spt into JSmol after first loading 1sva. State script load command modified to load "" FILTER "*.CA;biomolecule 1;bmchains;/=5"; and function _setDataState() made an empty function {} (previously it assigned distances from center to each of ~25,000 alpha carbons).
. Scene 85/859610/1ijw/1 is wiki/scripts/85/859610/1ijw/1.spt Within function _setState(): ppdiaCaptionCmd = "changeCaption('This is test caption XXX.','white','black');";
javascript @ppdiaCaptionCmd;
. Echos 1SVA but no atoms appear. Loads only 15K atoms instead of 24K.
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