7rmw: Difference between revisions
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==Crystal structure of B. subtilis PurR bound to ppGpp== | ==Crystal structure of B. subtilis PurR bound to ppGpp== | ||
<StructureSection load='7rmw' size='340' side='right'caption='[[7rmw]]' scene=''> | <StructureSection load='7rmw' size='340' side='right'caption='[[7rmw]], [[Resolution|resolution]] 2.45Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RMW FirstGlance]. <br> | <table><tr><td colspan='2'>[[7rmw]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7RMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7RMW FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rmw OCA], [https://pdbe.org/7rmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rmw RCSB], [https://www.ebi.ac.uk/pdbsum/7rmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rmw ProSAT]</span></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=G4P:GUANOSINE-5,3-TETRAPHOSPHATE'>G4P</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7rmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7rmw OCA], [https://pdbe.org/7rmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7rmw RCSB], [https://www.ebi.ac.uk/pdbsum/7rmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7rmw ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The nucleotide messenger (p)ppGpp allows bacteria to adapt to fluctuating environments by reprogramming the transcriptome. Despite its well-recognized role in gene regulation, (p)ppGpp is only known to directly affect transcription in Proteobacteria by binding to the RNA polymerase. Here, we reveal a different mechanism of gene regulation by (p)ppGpp in Firmicutes: (p)ppGpp directly binds to the transcription factor PurR to downregulate purine biosynthesis gene expression upon amino acid starvation. We first identified PurR as a receptor of (p)ppGpp in Bacillus anthracis. A co-structure with Bacillus subtilis PurR reveals that (p)ppGpp binds to a PurR pocket reminiscent of the active site of phosphoribosyltransferase enzymes that has been repurposed to serve a purely regulatory role, where the effectors (p)ppGpp and PRPP compete to allosterically control transcription. PRPP inhibits PurR DNA binding to induce transcription of purine synthesis genes, whereas (p)ppGpp antagonizes PRPP to enhance PurR DNA binding and repress transcription. A (p)ppGpp-refractory purR mutant in B. subtilis fails to downregulate purine synthesis genes upon amino acid starvation. Our work establishes the precedent of (p)ppGpp as an effector of a classical transcription repressor and reveals the key function of (p)ppGpp in regulating nucleotide synthesis through gene regulation, from soil bacteria to pathogens. | |||
The nucleotide messenger (p)ppGpp is an anti-inducer of the purine synthesis transcription regulator PurR in Bacillus.,Anderson BW, Schumacher MA, Yang J, Turdiev A, Turdiev H, Schroeder JW, He Q, Lee VT, Brennan RG, Wang JD Nucleic Acids Res. 2021 Dec 30. pii: 6489957. doi: 10.1093/nar/gkab1281. PMID:34967415<ref>PMID:34967415</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7rmw" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Schumacher | [[Category: Schumacher, M A]] | ||
[[Category: Dna binding]] | |||
[[Category: Dna binding protein]] | |||
[[Category: Ppgpp]] | |||
[[Category: Purr]] | |||
[[Category: Regulator]] | |||
[[Category: Transcription]] | |||