3dqi: Difference between revisions
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==Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures== | ==Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures== | ||
<StructureSection load='3dqi' size='340' side='right' caption='[[3dqi]], [[Resolution|resolution]] 1.42Å' scene=''> | <StructureSection load='3dqi' size='340' side='right'caption='[[3dqi]], [[Resolution|resolution]] 1.42Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3dqi]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[3dqi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeqvi Aeqvi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DQI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DQI FirstGlance]. <br> | ||
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR2:{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CR2</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1huy|1huy]], [[1yfp|1yfp]], [[2yfp|2yfp]], [[1f0b|1f0b]], [[1f09|1f09]], [[3dpw|3dpw]], [[3dpx|3dpx]], [[3dpz|3dpz]], [[3dq1|3dq1]], [[3dq2|3dq2]], [[3dq3|3dq3]], [[3dq4|3dq4]], [[3dq5|3dq5]], [[3dq6|3dq6]], [[3dq7|3dq7]], [[3dq8|3dq8]], [[3dq9|3dq9]], [[3dqa|3dqa]], [[3dqc|3dqc]], [[3dqd|3dqd]], [[3dqe|3dqe]], [[3dqf|3dqf]], [[3dqh|3dqh]], [[3dqj|3dqj]], [[3dqk|3dqk]], [[3dql|3dql]], [[3dqm|3dqm]], [[3dqn|3dqn]], [[3dqo|3dqo]], [[3dqu|3dqu]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1huy|1huy]], [[1yfp|1yfp]], [[2yfp|2yfp]], [[1f0b|1f0b]], [[1f09|1f09]], [[3dpw|3dpw]], [[3dpx|3dpx]], [[3dpz|3dpz]], [[3dq1|3dq1]], [[3dq2|3dq2]], [[3dq3|3dq3]], [[3dq4|3dq4]], [[3dq5|3dq5]], [[3dq6|3dq6]], [[3dq7|3dq7]], [[3dq8|3dq8]], [[3dq9|3dq9]], [[3dqa|3dqa]], [[3dqc|3dqc]], [[3dqd|3dqd]], [[3dqe|3dqe]], [[3dqf|3dqf]], [[3dqh|3dqh]], [[3dqj|3dqj]], [[3dqk|3dqk]], [[3dql|3dql]], [[3dqm|3dqm]], [[3dqn|3dqn]], [[3dqo|3dqo]], [[3dqu|3dqu]]</div></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GFP ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6100 AEQVI])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dqi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dqi OCA], [https://pdbe.org/3dqi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dqi RCSB], [https://www.ebi.ac.uk/pdbsum/3dqi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dqi ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[[ | [[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI]] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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==See Also== | ==See Also== | ||
*[[Green Fluorescent Protein|Green Fluorescent Protein]] | *[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Aeqvi]] | [[Category: Aeqvi]] | ||
[[Category: Large Structures]] | |||
[[Category: Barstow, B]] | [[Category: Barstow, B]] | ||
[[Category: Kim, C U]] | [[Category: Kim, C U]] | ||
Revision as of 22:27, 20 October 2021
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure StructuresStructure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 4: Structure 8 in a Series of 26 High Pressure Structures
Structural highlights
Function[GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedA protein molecule is an intricate system whose function is highly sensitive to small external perturbations. However, no examples that correlate protein function with progressive subangstrom structural perturbations have thus far been presented. To elucidate this relationship, we have investigated a fluorescent protein, citrine, as a model system under high-pressure perturbation. The protein has been compressed to produce deformations of its chromophore by applying a high-pressure cryocooling technique. A closely spaced series of x-ray crystallographic structures reveals that the chromophore undergoes a progressive deformation of up to 0.8 A at an applied pressure of 500 MPa. It is experimentally demonstrated that the structural motion is directly correlated with the progressive fluorescence shift of citrine from yellow to green under these conditions. This protein is therefore highly sensitive to subangstrom deformations and its function must be understood at the subangstrom level. These results have significant implications for protein function prediction and biomolecule design and engineering, because they suggest methods to tune protein function by modification of the protein scaffold. Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.,Barstow B, Ando N, Kim CU, Gruner SM Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13362-6. Epub 2008 Sep 3. PMID:18768811[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences |
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