3dmx: Difference between revisions

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 ==Benzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant==
-<StructureSection load='3dmx' size='340' side='right' caption='[[3dmx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+<StructureSection load='3dmx' size='340' side='right'caption='[[3dmx]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3dmx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteriophage_t4 Bacteriophage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DMX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3dmx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DMX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DMX FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BNZ:BENZENE'>BNZ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BNZ:BENZENE'>BNZ</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HED:2-HYDROXYETHYL+DISULFIDE'>HED</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[181l|181l]], [[3dke|3dke]], [[3dmv|3dmv]], [[3dmz|3dmz]], [[3dn0|3dn0]], [[3dn1|3dn1]], [[3dn2|3dn2]], [[3dn3|3dn3]], [[3dn4|3dn4]], [[3dn6|3dn6]], [[3dn8|3dn8]], [[3dna|3dna]]</td></tr>
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[181l|181l]], [[3dke|3dke]], [[3dmv|3dmv]], [[3dmz|3dmz]], [[3dn0|3dn0]], [[3dn1|3dn1]], [[3dn2|3dn2]], [[3dn3|3dn3]], [[3dn4|3dn4]], [[3dn6|3dn6]], [[3dn8|3dn8]], [[3dna|3dna]]</div></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">E ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 Bacteriophage T4])</td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">E ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr>
-<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dmx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmx OCA], [http://pdbe.org/3dmx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dmx RCSB], [http://www.ebi.ac.uk/pdbsum/3dmx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmx ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dmx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dmx OCA], [https://pdbe.org/3dmx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dmx RCSB], [https://www.ebi.ac.uk/pdbsum/3dmx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dmx ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/LYS_BPT4 LYS_BPT4]] Helps to release the mature phage particles from the cell wall by breaking down the peptidoglycan.
+[[https://www.uniprot.org/uniprot/LYS_BPT4 LYS_BPT4]] Helps to release the mature phage particles from the cell wall by breaking down the peptidoglycan.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 38: / Line 38: @@
 __TOC__
 </StructureSection>
-[[Category: Bacteriophage t4]]
+[[Category: Bpt4]]
+[[Category: Large Structures]]
 [[Category: Lysozyme]]
 [[Category: Liu, L]]