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== S<sub>N</sub>2-Substitution of chloride and methanol ==
==S<sub>N</sub>2-substitution of chloride and methanol==
<StructureSection load='' size='340' side='right' caption='' scene='54/542286/Side_view/9'>
SN2 reaction is a basic reaction type in organic chemistry. The letter S<sub>N</sub> stand for nulceophilic Substitution, the number 2 stands for bimolecular. This means that both reactions partners are involved in the reaction rate determining step. It also exists an S<sub>N</sub>1 reaction; here, only one reaction partner is involved in this step.


On the other side, SN2 reactions are characterised for exchanging substituents. The substituent that leaves the molecule is called leaving group.
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Typically, alkanes with a substituent in primary position undergo S<sub>N</sub>2 reactions. In contrast to a S<sub>N</sub>1 reaction, no stable carbo cation can be formed. Therefore, another way will be taken.
<script>rotate 90; zoom 0; zoom 95.; spacefill on; dots on; spacefill 25%; set antialiasDisplay ON</script>
The S<sub>N</sub>2 <jmol><jmolLink><script>anim mode once; frame range 1 10; delay 0.5; frame play</script><text>reaction starts</text></jmolLink></jmol> by establishing a so called intermediate state.  This means that both educts come close to each other. By this, the bond of the leaving group is partly broken, and the bond to the new group is partly formed. The formation of this intermediate state is the rate determining step of the reaction.
 
In the <jmol><jmolLink><script>anim mode once; frame range 11 20; delay 0.5; frame play</script><text>second step</text></jmolLink></jmol>, the bond of the leaving group is completely broken, and at the same time the bond to the new substituent is completely formed.
<caption>SN2 - Substitution of Cl&lt;sup>-&lt;/sup> and Methanol</caption>
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[[Image:reaction_scheme_sn2.jpg|500px]]
SN2 reaction is a basic reaction type in organic chemistry. The letter S<sub>N</sub> stands for nulceophilic Substitution, the number 2 stands for bimolecular, with both reactions partners are involved in the reaction rate determining step. It also exists an S<sub>N</sub>1 reaction; here, only one reaction partner is involved in this step. On the other side, SN2 reactions are characterized by exchanging substituents. The substituent that leaves the molecule is called leaving group.


The S<sub>N</sub>2 reaction has a very interesting stereochemistry.
Typically, alkanes with a substituent in primary position undergo S<sub>N</sub>2 reactions. In contrast to a S<sub>N</sub>1 reaction, no stable carbo cation can be formed, therefore, another way is taken.
inversion of the stereocenter...
The S<sub>N</sub>2 <jmol><jmolLink><script>anim mode once; frame range 1 10; delay 0.5; frame play</script><text>reaction starts</text></jmolLink></jmol> by establishing a so called ''intermediate'' state, with both educts comeing close to each other. By this, the bond of the leaving group is partly broken, and the bond to the new group is partly formed. The formation of this intermediate state is the rate determining step of the reaction.
In the <jmol><jmolLink><script>anim mode once; frame range 11 20; delay 0.5; frame play</script><text>second step</text></jmolLink></jmol>, the bond of the leaving group is completely broken, and at the same time the bond to the new substituent is completely formed.
[[Image:reaction_scheme_sn2.jpg|550px]] <br>
The S<sub>N</sub>2 reaction has a very interesting stereochemistry inversion of the stereocenter<ref>PMID: 27505286 </ref> with an animated example of the substitution of chloride and methanol shown. Please click on the buttons below to '''animate''' the reaction with different representations. Use the '''popup''' button to enlarge the view and the '''quality''' button to turn on anti-aliasing.


<jmol>
<jmol>
<jmolButton><script>frame 1</script><text>First</text></jmolButton>
<jmolButton><script>frame 1</script><text>First</text></jmolButton>
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The animation was originally done by [[User:Verena Pietzner | Prof. Dr. Verena Pietzner]]; for details, see her web site ChiLe<ref>[http://www.chemieunterricht-interaktiv.de/en/index.html ChiLe Web Site]</ref>. The implementation into Proteopedia was done by [[User:Jaime Prilusky | Prof. Jaime Prilusky]], [[User:Joel L. Sussman | Prof. Joel L. Sussman ]] 
and [[User:Veronika Pelekhov | Veronika Pelekhov]].


===See also===
===See also===
[[SN1_reaction|S<sub>N</sub>1 reaction: Substitution of Cl<sup>&minus;</sup> and ''tert''-Butanol ]]
[[SN1_reaction|S<sub>N</sub>1 reaction: Substitution of Cl<sup>&minus;</sup> and ''tert''-Butanol ]]
== References ==
== References ==
This demo was adapted from http://www.chemieunterricht-interaktiv.de/en/animations/sn2_substitution/sn2_substitution_3d.html by Dr. V. Pietzner, part of the ChiLe project
<references/>
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</StructureSection>
[[Category: BioMolViz]]
[[Category: Chemical Reactions]]

Revision as of 19:21, 8 July 2021

SN2-substitution of chloride and methanolSN2-substitution of chloride and methanol

SN2 - Substitution of Cl- and Methanol

Drag the structure with the mouse to rotate

SN2 reaction is a basic reaction type in organic chemistry. The letter SN stands for nulceophilic Substitution, the number 2 stands for bimolecular, with both reactions partners are involved in the reaction rate determining step. It also exists an SN1 reaction; here, only one reaction partner is involved in this step. On the other side, SN2 reactions are characterized by exchanging substituents. The substituent that leaves the molecule is called leaving group.

Typically, alkanes with a substituent in primary position undergo SN2 reactions. In contrast to a SN1 reaction, no stable carbo cation can be formed, therefore, another way is taken. The SN2 by establishing a so called intermediate state, with both educts comeing close to each other. By this, the bond of the leaving group is partly broken, and the bond to the new group is partly formed. The formation of this intermediate state is the rate determining step of the reaction. In the , the bond of the leaving group is completely broken, and at the same time the bond to the new substituent is completely formed.
The SN2 reaction has a very interesting stereochemistry inversion of the stereocenter[1] with an animated example of the substitution of chloride and methanol shown. Please click on the buttons below to animate the reaction with different representations. Use the popup button to enlarge the view and the quality button to turn on anti-aliasing.

The animation was originally done by Prof. Dr. Verena Pietzner; for details, see her web site ChiLe[2]. The implementation into Proteopedia was done by Prof. Jaime Prilusky, Prof. Joel L. Sussman and Veronika Pelekhov.

See alsoSee also

SN1 reaction: Substitution of Cl and tert-Butanol

ReferencesReferences

  1. Wang Y, Song H, Szabo I, Czako G, Guo H, Yang M. Mode-Specific SN2 Reaction Dynamics. J Phys Chem Lett. 2016 Sep 1;7(17):3322-7. doi: 10.1021/acs.jpclett.6b01457. Epub, 2016 Aug 12. PMID:27505286 doi:http://dx.doi.org/10.1021/acs.jpclett.6b01457
  2. ChiLe Web Site

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Jaime Prilusky, Verena Pietzner, Angel Herraez, Joel L. Sussman