Protein crosslinks: Difference between revisions
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*A text search at PDBe gives ~12,000 hits (July, 2021). In a small sample of the latter hits, none contained the term "isopeptide". Also based on a small sample, some entries that contain verified isopeptide bonds do not contain the term (for example, [[5jqf]]). | *A text search at PDBe gives ~12,000 hits (July, 2021). In a small sample of the latter hits, none contained the term "isopeptide". Also based on a small sample, some entries that contain verified isopeptide bonds do not contain the term (for example, [[5jqf]]). | ||
*Example: Bacterial pilus adhesin [[2xi9]] has 2 isopeptide bonds (and 2 thioester bonds). | *Example: Bacterial pilus adhesin [[2xi9]] has 2 isopeptide bonds (and 2 thioester bonds). Additional examples will be found in the lower left panel of FirstGlance when this example is viewed. | ||
Additional examples will be found in the lower left panel of FirstGlance when this example is viewed. | |||
*Visualization: [https://firstglance.jmol.org/fg.htm?mol=2xi9 View 2xi9 in FirstGlance]. If you see "<span style='color:#00d0a0;'>➤➤</span><u>Show more details</u>" in the [http://firstglance.jmol.org/where.htm#mit Molecule Information Tab], click on that. | *Visualization: [https://firstglance.jmol.org/fg.htm?mol=2xi9 View 2xi9 in FirstGlance]. If you see "<span style='color:#00d0a0;'>➤➤</span><u>Show more details</u>" in the [http://firstglance.jmol.org/where.htm#mit Molecule Information Tab], click on that. | ||