Protein crosslinks: Difference between revisions
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Eric Martz (talk | contribs) |
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*A text search at PDBe gives ~1,400 hits (July, 2021). Among a sample of 5 of the PDBe hits (every 100th in the listing), none had thioester bonds, but most contained terms such as "thioesterase" or "thioester". | *A text search at PDBe gives ~1,400 hits (July, 2021). Among a sample of 5 of the PDBe hits (every 100th in the listing), none had thioester bonds, but most contained terms such as "thioesterase" or "thioester". | ||
*Adding "and not thioesterase" to the PDBe search reduced the hits to ~500. | *Adding "and not thioesterase" to the PDBe search reduced the hits to ~500. Five hits were tested (the first of every 100 in a listing sorted with best resolution at the top) but none had thioester bonds. | ||
*RCSB Advanced Search has "Biologically Interesting Molecules (BIRD): BIRD Type = Thioester", which gives 19 hits (July, 2021). However, only 2% of entries have BIRD annotations. | *RCSB Advanced Search has "Biologically Interesting Molecules (BIRD): BIRD Type = Thioester", which gives 19 hits (July, 2021). However, only 2% of entries have BIRD annotations. | ||