7nsd: Difference between revisions
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==Triphosphate tunnel metalloenzyme from Sulfolobus acidocaldarius in complex with ATP and calcium== | ==Triphosphate tunnel metalloenzyme from Sulfolobus acidocaldarius in complex with ATP and calcium== | ||
<StructureSection load='7nsd' size='340' side='right'caption='[[7nsd]]' scene=''> | <StructureSection load='7nsd' size='340' side='right'caption='[[7nsd]], [[Resolution|resolution]] 2.19Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NSD FirstGlance]. <br> | <table><tr><td colspan='2'>[[7nsd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulac Sulac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NSD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NSD FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7nsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7nsd OCA], [https://pdbe.org/7nsd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7nsd RCSB], [https://www.ebi.ac.uk/pdbsum/7nsd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7nsd ProSAT]</span></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Saci_0718 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=330779 SULAC])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7nsd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7nsd OCA], [https://pdbe.org/7nsd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7nsd RCSB], [https://www.ebi.ac.uk/pdbsum/7nsd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7nsd ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
CYTH proteins make up a large superfamily that is conserved in all three domains of life. These enzymes have a triphosphate tunnel metalloenzyme (TTM) fold, which typically results in phosphatase functions, e.g. RNA triphosphatase, inorganic polyphosphatase or thiamine triphosphatase. Some CYTH orthologs cyclize nucleotide triphosphates to 3',5'-cyclic nucleotides. So far, archaeal CYTH proteins have been annotated as adenylyl cyclases, although experimental evidence to support these annotations is lacking. To address this gap, we characterized a CYTH ortholog, SaTTM, from the crenarchaeote Sulfolobus acidocaldarius. Our in silico studies derived ten major subclasses within the CYTH family implying a close relationship between these archaeal CYTH enzymes and class IV adenylyl cyclases. However, initial biochemical characterization reveals inability of SaTTM to produce any cyclic nucleotides. Instead, our structural and functional analyses show a classical TTM behavior, i.e. triphosphatase activity, where pyrophosphate causes product inhibition. The Ca(2+)-inhibited Michaelis complex indicates a two-metal ion reaction mechanism analogous to other TTMs. Co-crystal structures of SaTTM further reveal conformational dynamics in SaTTM that suggest feedback inhibition in TTMs due to tunnel closure in the product state. These structural insights combined with further sequence-similarity network based in silico analyses provide a firm molecular basis for distinguishing CYTH orthologs with phosphatase activities from class IV adenylyl cyclases. | |||
The archaeal triphosphate tunnel metalloenzyme SaTTM defines structural determinants for the diverse activities in the CYTH protein family.,Vogt MS, Ngouoko Nguepbeu RR, Mohr MKF, Albers SV, Essen LO, Banerjee A J Biol Chem. 2021 May 21:100820. doi: 10.1016/j.jbc.2021.100820. PMID:34029589<ref>PMID:34029589</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7nsd" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Banerjee A]] | [[Category: Sulac]] | ||
[[Category: Essen L | [[Category: Banerjee, A]] | ||
[[Category: Vogt | [[Category: Essen, L O]] | ||
[[Category: Vogt, M S]] | |||
[[Category: Atp]] | |||
[[Category: Cyth]] | |||
[[Category: Hydrolase]] | |||
[[Category: Ttm]] | |||