Chaperonin 3D structures: Difference between revisions
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*''Large subunit'' | *''Large subunit'' | ||
**[[7azp]] – hCpn60 – human – Cryo EM<br /> | |||
**[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR /> | **[[3m6c]] – MtGroEL1 apical domain – ''Mycobacterium tuberculosis''<BR /> | ||
**[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR /> | **[[1sjp]], [[3rtk]] – MtGroEL2 residues 42-539<BR /> | ||
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**[[1dk7]], [[1la1]] - EcGroEL apical domain<br /> | **[[1dk7]], [[1la1]] - EcGroEL apical domain<br /> | ||
**[[1fy9]], [[1fya]], [[1kid]], [[1jon]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR /> | **[[1fy9]], [[1fya]], [[1kid]], [[1jon]], [[3vz6]], [[3vz7]], [[3vz8]] – EcGroEL apical domain (mutant) <BR /> | ||
**[[1srv]] – | **[[1srv]] – TtCpn60 apical domain - ''Thermus thermophilus''<BR /> | ||
**[[3osx]] - | **[[3osx]] - Cpn60 apical domain – ''Xenorhabdus nematophila''<br /> | ||
**[[1iok]] – | **[[1iok]] – Cpn60 – ''Paracoccus denitrificans''<br /> | ||
**[[5da8]] - GroEL – ''Chlorobium tepidum''<br /> | **[[5da8]] - GroEL – ''Chlorobium tepidum''<br /> | ||
**[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br /> | **[[5cdk]], [[5cdj]], [[5cdi]] - GroEL apical domain – ''Chlamydomonas reinhardtii''<br /> | ||
**[[6kfv]] - GroEL – ''Xanthomonas oryzae''<br /> | |||
*''Large subunit binary complex'' | *''Large subunit binary complex'' | ||
**[[4pj1]] - hGroEL + ADP <br /> | |||
**[[1kp8]] - EcGroEL (mutant) + ATP<BR /> | **[[1kp8]] - EcGroEL (mutant) + ATP<BR /> | ||
**[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]] - EcGroEL (mutant) + ATP – Cryo EM<br /> | **[[4aar]], [[4aas]], [[4aau]], [[4ab2]], [[4ab3]] - EcGroEL (mutant) + ATP – Cryo EM<br /> | ||
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**[[4ki8]] - EcGroEL (mutant) + ADP<br /> | **[[4ki8]] - EcGroEL (mutant) + ADP<br /> | ||
**[[1mnf]] – EcGroEL + polypeptide<BR /> | **[[1mnf]] – EcGroEL + polypeptide<BR /> | ||
**[[2cgt]] – EcGroEL + capsid assbly protein GP31 – EM<BR /> | **[[2cgt]] – EcGroEL + capsid assbly protein GP31 – Cryo EM<BR /> | ||
**[[1dkd]] - EcGroEL apical domain + polypeptide<br /> | **[[1dkd]] - EcGroEL apical domain + polypeptide<br /> | ||
**[[ | **[[7k3z]] – Cpn60 (mutant) + ATP – ''Plasmodium falciparum''<br /> | ||
*''Small subunit'' | *''Small subunit'' | ||
**[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR /> | **[[3nx6]] – GroES residues 40-134 (mutant) – ''Xanthomonas oryzae''<BR /> | ||
**[[1wnr]] – | **[[1wnr]] – TtCpn10 residues 1-94<BR /> | ||
**[[1p3h]], [[1hx5]] – | **[[1p3h]], [[1hx5]] – MtCpn10<BR /> | ||
**[[1p82]], [[1p83]] - | **[[1p82]], [[1p83]] - MtCpn10 residues 1-25 - NMR<BR /> | ||
**[[1egs]] - GroES residues 19-27 - NMR | **[[1egs]] - GroES residues 19-27 - NMR | ||
*''Large + small subunit'' | *''Large + small subunit'' | ||
**[[6ht7]] - hCpn60 + Cpn10 + ADP <br /> | |||
**[[6mrc]], [[6mrd]] - hCpn60 + Cpn10 + ADP – Cryo EM<br /> | |||
**[[1svt]], [[1pcq]] - EcGroEL + GroES<BR /> | **[[1svt]], [[1pcq]] - EcGroEL + GroES<BR /> | ||
**[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR /> | **[[1pf9]], [[1aon]], [[4pko]], [[5opx]] - EcGroEL + GroES + ADP<BR /> | ||
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**[[1gru]] - EcGroEL + GroES + ATP + ADP – Cryo EM<BR /> | **[[1gru]] - EcGroEL + GroES + ATP + ADP – Cryo EM<BR /> | ||
**[[3zpz]], [[3zq0]], [[3zq1]] - EcGroEL + GroES + ADP – Cryo EM<br /> | **[[3zpz]], [[3zq0]], [[3zq1]] - EcGroEL + GroES + ADP – Cryo EM<br /> | ||
**[[4v4o]], [[4pkn]] - | **[[4v4o]], [[4pkn]] - TtCpn60 + Cpn10 + ADP | ||
*'''Group II''' | *'''Group II''' | ||
**[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]] – | **[[3izh]], [[3izi]], [[3izj]], [[3izk]], [[3izl]], [[3izm]], [[3izn]], [[3los]], [[3iyf]], [[3j3x]] – MmCpn – ''Methanococcus maripaludis'' – EM<BR /> | ||
**[[3kfb]], [[3kfe]], [[3kfk]] – | **[[3kfb]], [[3kfe]], [[3kfk]] – MmCpn<BR /> | ||
**[[5w79]] - | **[[5w79]] - MmCpn (mutant)<br /> | ||
**[[3j02]], [[3j03]] – | **[[3j02]], [[3j03]] – MmCpn (mutant) – Cryo EM<br /> | ||
**[[3ruq]] - | **[[3ruq]] - MmCpn + ADP<br /> | ||
**[[3rus]], [[5w74]] - | **[[3rus]], [[5w74]] - MmCpn (mutant) + ADP<br /> | ||
**[[3ruw]] - | **[[3ruw]] - MmCpn (mutant) + ADP-AlF3<br /> | ||
**[[3ruv]] - | **[[3ruv]] - MmCpn (mutant) + ATP analog<br /> | ||
*'''CCT''' | *'''CCT''' or '''TRiC''' | ||
**[[ | **[[6krd]], [[6kre]], [[6ks6]], [[6ks8]], [[6qb8]] - hCpn CCT + ADP – Cryo EM<br /> | ||
**[[ | **[[7lum]] - hCpn CCT + ATP – Cryo EM<br /> | ||
**[[3iyg]], [[4a0o]] - | **[[6nr8]], [[6nr9]], [[6nrb]], [[6nrc]], [[6nrd]] - hCpn CCT + HPFD – Cryo EM<br /> | ||
**[[4a0v]] - | **[[7lup]] - hCpn CCT + sigma 3 – Cryo EM<br /> | ||
**[[4a0w]] - | **[[2xsm]], [[4b2t]] – bCpn CCT – bovine<BR /> | ||
**[[4a13]] - | **[[3iyg]], [[4a0o]] - bCpn CCT – Cryo EM<BR /> | ||
**[[3ktt]] - | **[[4a0v]] - bCpn CCT + AMPPNP – Cryo EM<br /> | ||
**[[1gml]], [[1gn1]] - | **[[4a0w]] - bCpn CCT + ADP + AlF3 – Cryo EM<br /> | ||
**[[4a13]] - bCpn CCT + ADP – Cryo EM<br /> | |||
**[[3ktt]] - bCpn CCT β subunit – Cryo EM<BR /> | |||
**[[1gml]], [[1gn1]] - Cpn CCT γ subunit apical domain – mouse<br /> | |||
**[[4v81]], [[4v94]], [[4v8r]] – Cpn CCT - yeast<br /> | |||
*'''Hsp33''' see [[Heat Shock Proteins]] | *'''Hsp33''' see [[Heat Shock Proteins]] | ||
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**[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br /> | **[[4xcd]] - SsTherm β subunit + ADP – ''Sulfolobus solfataricus''<br /> | ||
**[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br /> | **[[4xcg]], [[4xci]] - SsTherm α+β subunits + ADP<br /> | ||
**[[6xhi]] - SasTherm subunit + ADP – ''Saccharolobus solfataricus''<br /> | |||
**[[1lep]] – | **[[6xhj]] - SasTherm subunit + ATP <br /> | ||
**[[1lep]] – Cpn10 – ''Mycobacterium leprae'' | |||
*'''Group III''' | *'''Group III''' | ||