2k7k: Difference between revisions
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==Human Acylphosphatase (AcPh) common type== | ==Human Acylphosphatase (AcPh) common type== | ||
<StructureSection load='2k7k' size='340' side='right' caption='[[2k7k]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | <StructureSection load='2k7k' size='340' side='right'caption='[[2k7k]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2k7k]] is a 1 chain structure with sequence from [ | <table><tr><td colspan='2'>[[2k7k]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K7K FirstGlance]. <br> | ||
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2k7j|2k7j]]</td></tr> | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2k7j|2k7j]]</div></td></tr> | ||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACYP1, ACYPE ([ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACYP1, ACYPE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Acylphosphatase Acylphosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.7 3.6.1.7] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k7k OCA], [https://pdbe.org/2k7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k7k RCSB], [https://www.ebi.ac.uk/pdbsum/2k7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k7k ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[[ | [[https://www.uniprot.org/uniprot/ACYP1_HUMAN ACYP1_HUMAN]] Its physiological role is not yet clear. | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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[[Category: Acylphosphatase]] | [[Category: Acylphosphatase]] | ||
[[Category: Human]] | [[Category: Human]] | ||
[[Category: Large Structures]] | |||
[[Category: Gribenko, A V]] | [[Category: Gribenko, A V]] | ||
[[Category: Liu, J]] | [[Category: Liu, J]] | ||
Revision as of 11:11, 7 April 2021
Human Acylphosphatase (AcPh) common typeHuman Acylphosphatase (AcPh) common type
Structural highlights
Function[ACYP1_HUMAN] Its physiological role is not yet clear. Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedHere, we report the application of a computational approach that allows the rational design of enzymes with enhanced thermostability while retaining full enzymatic activity. The approach is based on the optimization of the energy of charge-charge interactions on the protein surface. We experimentally tested the validity of the approach on 2 human enzymes, acylphosphatase (AcPh) and Cdc42 GTPase, that differ in size (98 vs. 198-aa residues, respectively) and tertiary structure. We show that the designed proteins are significantly more stable than the corresponding WT proteins. The increase in stability is not accompanied by significant changes in structure, oligomerization state, or, most importantly, activity of the designed AcPh or Cdc42. This success of the design methodology suggests that it can be universally applied to other enzymes, on its own or in combination with the other strategies based on redesign of the interactions in the protein core. Rational stabilization of enzymes by computational redesign of surface charge-charge interactions.,Gribenko AV, Patel MM, Liu J, McCallum SA, Wang C, Makhatadze GI Proc Natl Acad Sci U S A. 2009 Feb 5. PMID:19196981[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References |
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