1e4d: Difference between revisions

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[[Image:1e4d.jpg|left|200px]]
[[Image:1e4d.jpg|left|200px]]


{{Structure
<!--
|PDB= 1e4d |SIZE=350|CAPTION= <scene name='initialview01'>1e4d</scene>, resolution 1.8&Aring;
The line below this paragraph, containing "STRUCTURE_1e4d", creates the "Structure Box" on the page.
|SITE=
You may change the PDB parameter (which sets the PDB file loaded into the applet)
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span>
or leave the SCENE parameter empty for the default display.
|GENE=  
-->
|DOMAIN=
{{STRUCTURE_1e4d| PDB=1e4d  | SCENE= }}  
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1e4d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1e4d OCA], [http://www.ebi.ac.uk/pdbsum/1e4d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1e4d RCSB]</span>
}}


'''STRUCTURE OF OXA10 BETA-LACTAMASE AT PH 8.3'''
'''STRUCTURE OF OXA10 BETA-LACTAMASE AT PH 8.3'''
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[[Category: Tranier, S.]]
[[Category: Tranier, S.]]
[[Category: Vakulenko, S.]]
[[Category: Vakulenko, S.]]
[[Category: antiobitic resistance]]
[[Category: Antiobitic resistance]]
[[Category: beta-lactamase]]
[[Category: Beta-lactamase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri May  2 14:38:53 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 19:54:53 2008''

Revision as of 14:38, 2 May 2008

File:1e4d.jpg

Template:STRUCTURE 1e4d

STRUCTURE OF OXA10 BETA-LACTAMASE AT PH 8.3


OverviewOverview

BACKGROUND: beta-lactam antibiotic therapies are commonly challenged by the hydrolytic activities of beta-lactamases in bacteria. These enzymes have been grouped into four classes: A, B, C, and D. Class B beta-lactamases are zinc dependent, and enzymes of classes A, C, and D are transiently acylated on a serine residue in the course of the turnover chemistry. While class A and C beta-lactamases have been extensively characterized by biochemical and structural methods, class D enzymes remain the least studied despite their increasing importance in the clinic. RESULTS: The crystal structure of the OXA10 class D beta-lactamase has been solved to 1.66 A resolution from a gold derivative and MAD phasing. This structure reveals that beta-lactamases from classes D and A, despite very poor sequence similarity, share a similar overall fold. An additional beta strand in OXA10 mediates the association into dimers characterized by analytical ultracentrifugation. Major differences are found when comparing the molecular details of the active site of this class D enzyme to the corresponding regions in class A and C beta-lactamases. In the native structure of the OXA10 enzyme solved to 1.8 A, Lys-70 is carbamylated. CONCLUSIONS: Several features were revealed by this study: the dimeric structure of the OXA10 beta-lactamase, an extension of the substrate binding site which suggests that class D enzymes may bind other substrates beside beta-lactams, and carbamylation of the active site Lys-70 residue. The CO2-dependent activity of the OXA10 enzyme and the kinetic properties of the natural OXA17 mutant protein suggest possible relationships between carbamylation, inhibition of the enzyme by anions, and biphasic behavior of the enzyme.

About this StructureAbout this Structure

1E4D is a Single protein structure of sequence from Pseudomonas aeruginosa. Full crystallographic information is available from OCA.

ReferenceReference

Insights into class D beta-lactamases are revealed by the crystal structure of the OXA10 enzyme from Pseudomonas aeruginosa., Maveyraud L, Golemi D, Kotra LP, Tranier S, Vakulenko S, Mobashery S, Samama JP, Structure. 2000 Dec 15;8(12):1289-98. PMID:11188693 Page seeded by OCA on Fri May 2 14:38:53 2008

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