Jmol/Cavities pockets and tunnels: Difference between revisions
Eric Martz (talk | contribs) No edit summary |
Eric Martz (talk | contribs) No edit summary |
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Since we are not interested in the tiny ones, we can hide them by specifying a value for ''minset''. Cavities rendered with fewer than the number of triangles specified for minset will not be shown. By trial and error, a good minset number is 1000, making the Jmol command: | Since we are not interested in the tiny ones, we can hide them by specifying a value for ''minset''. Cavities rendered with fewer than the number of triangles specified for minset will not be shown. By trial and error, a good minset number is 1000, making the Jmol command: | ||
:<tt>isosurface minset 1000 cavity</tt> Image:6zgi-m1000-cav.pngj | :<tt><scene name='85/858407/6zgi-m1000-c/1'>isosurface minset 1000 cavity</scene></tt> Image:6zgi-m1000-cav.pngj | ||
Legend: Spike protein [[6zgi]]: isosurface minset 1000 cavity. | Legend: Spike protein [[6zgi]]: isosurface minset 1000 cavity. | ||