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==Crystal structure of Kemp Eliminase HG3.17== | ==Crystal structure of Kemp Eliminase HG3.17== | ||
<StructureSection load='7k4t' size='340' side='right'caption='[[7k4t]]' scene=''> | <StructureSection load='7k4t' size='340' side='right'caption='[[7k4t]], [[Resolution|resolution]] 1.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K4T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K4T FirstGlance]. <br> | <table><tr><td colspan='2'>[[7k4t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theau Theau]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7K4T OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7K4T FirstGlance]. <br> | ||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k4t OCA], [http://pdbe.org/7k4t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k4t RCSB], [http://www.ebi.ac.uk/pdbsum/7k4t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k4t ProSAT]</span></td></tr> | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">XYNA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5087 THEAU])</td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7k4t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7k4t OCA], [http://pdbe.org/7k4t PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7k4t RCSB], [http://www.ebi.ac.uk/pdbsum/7k4t PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7k4t ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
The advent of biocatalysts designed computationally and optimized by laboratory evolution provides an opportunity to explore molecular strategies for augmenting catalytic function. Applying a suite of nuclear magnetic resonance, crystallography, and stopped-flow techniques to an enzyme designed for an elementary proton transfer reaction, we show how directed evolution gradually altered the conformational ensemble of the protein scaffold to populate a narrow, highly active conformational ensemble and accelerate this transformation by nearly nine orders of magnitude. Mutations acquired during optimization enabled global conformational changes, including high-energy backbone rearrangements, that cooperatively organized the catalytic base and oxyanion stabilizer, thus perfecting transition-state stabilization. The development of protein catalysts for many chemical transformations could be facilitated by explicitly sampling conformational substates during design and specifically stabilizing productive substates over all unproductive conformations. | |||
How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.,Otten R, Padua RAP, Bunzel HA, Nguyen V, Pitsawong W, Patterson M, Sui S, Perry SL, Cohen AE, Hilvert D, Kern D Science. 2020 Dec 18;370(6523):1442-1446. doi: 10.1126/science.abd3623. Epub 2020, Nov 19. PMID:33214289<ref>PMID:33214289</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 7k4t" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Endo-1,4-beta-xylanase]] | |||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Bunzel A]] | [[Category: Theau]] | ||
[[Category: Cohen | [[Category: Bunzel, A]] | ||
[[Category: Hilvert D]] | [[Category: Cohen, A E]] | ||
[[Category: Kern D]] | [[Category: Hilvert, D]] | ||
[[Category: Nguyen V]] | [[Category: Kern, D]] | ||
[[Category: Otten R]] | [[Category: Nguyen, V]] | ||
[[Category: Padua | [[Category: Otten, R]] | ||
[[Category: Patterson M]] | [[Category: Padua, R A.P]] | ||
[[Category: Perry | [[Category: Patterson, M]] | ||
[[Category: Pitsawong W]] | [[Category: Perry, S L]] | ||
[[Category: Sui S]] | [[Category: Pitsawong, W]] | ||
[[Category: Sui, S]] | |||
[[Category: Directed evolution]] | |||
[[Category: Hydrolase]] | |||
[[Category: Kemp elimination]] | |||
Revision as of 10:06, 30 December 2020
Crystal structure of Kemp Eliminase HG3.17Crystal structure of Kemp Eliminase HG3.17
Structural highlights
Publication Abstract from PubMedThe advent of biocatalysts designed computationally and optimized by laboratory evolution provides an opportunity to explore molecular strategies for augmenting catalytic function. Applying a suite of nuclear magnetic resonance, crystallography, and stopped-flow techniques to an enzyme designed for an elementary proton transfer reaction, we show how directed evolution gradually altered the conformational ensemble of the protein scaffold to populate a narrow, highly active conformational ensemble and accelerate this transformation by nearly nine orders of magnitude. Mutations acquired during optimization enabled global conformational changes, including high-energy backbone rearrangements, that cooperatively organized the catalytic base and oxyanion stabilizer, thus perfecting transition-state stabilization. The development of protein catalysts for many chemical transformations could be facilitated by explicitly sampling conformational substates during design and specifically stabilizing productive substates over all unproductive conformations. How directed evolution reshapes the energy landscape in an enzyme to boost catalysis.,Otten R, Padua RAP, Bunzel HA, Nguyen V, Pitsawong W, Patterson M, Sui S, Perry SL, Cohen AE, Hilvert D, Kern D Science. 2020 Dec 18;370(6523):1442-1446. doi: 10.1126/science.abd3623. Epub 2020, Nov 19. PMID:33214289[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. References
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