2j9n: Difference between revisions
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<StructureSection load='2j9n' size='340' side='right'caption='[[2j9n]], [[Resolution|resolution]] 1.50Å' scene=''> | <StructureSection load='2j9n' size='340' side='right'caption='[[2j9n]], [[Resolution|resolution]] 1.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[2j9n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J9N OCA]. For a <b>guided tour on the structure components</b> use [http:// | <table><tr><td colspan='2'>[[2j9n]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2J9N OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2J9N FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IPH:PHENOL'>IPH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IPH:PHENOL'>IPH</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1aq7|1aq7]], [[1auj|1auj]], [[1az8|1az8]], [[1bju|1bju]], [[1bjv|1bjv]], [[1btp|1btp]], [[1btw|1btw]], [[1btx|1btx]], [[1bty|1bty]], [[1btz|1btz]], [[1c1n|1c1n]], [[1c1o|1c1o]], [[1c1p|1c1p]], [[1c1q|1c1q]], [[1c1r|1c1r]], [[1c1s|1c1s]], [[1c1t|1c1t]], [[1c2d|1c2d]], [[1c2e|1c2e]], [[1c2f|1c2f]], [[1c2g|1c2g]], [[1c2h|1c2h]], [[1c2i|1c2i]], [[1c2j|1c2j]], [[1c2k|1c2k]], [[1c2l|1c2l]], [[1c2m|1c2m]], [[1c5p|1c5p]], [[1c5q|1c5q]], [[1c5r|1c5r]], [[1c5s|1c5s]], [[1c5t|1c5t]], [[1c5u|1c5u]], [[1c5v|1c5v]], [[1c9t|1c9t]], [[1ce5|1ce5]], [[1cu7|1cu7]], [[1cu8|1cu8]], [[1cu9|1cu9]], [[1d6r|1d6r]], [[1eb2|1eb2]], [[1ejm|1ejm]], [[1ezx|1ezx]], [[1f0t|1f0t]], [[1f0u|1f0u]], [[1f2s|1f2s]], [[1g36|1g36]], [[1g3b|1g3b]], [[1g3c|1g3c]], [[1g3d|1g3d]], [[1g3e|1g3e]], [[1g9i|1g9i]], [[1gbt|1gbt]], [[1ghz|1ghz]], [[1gi0|1gi0]], [[1gi1|1gi1]], [[1gi2|1gi2]], [[1gi3|1gi3]], [[1gi4|1gi4]], [[1gi5|1gi5]], [[1gi6|1gi6]], [[1gj6|1gj6]], [[1hj9|1hj9]], [[1j8a|1j8a]], [[1jir|1jir]], [[1jrs|1jrs]], [[1jrt|1jrt]], [[1k1i|1k1i]], [[1k1j|1k1j]], [[1k1l|1k1l]], [[1k1m|1k1m]], [[1k1n|1k1n]], [[1k1o|1k1o]], [[1k1p|1k1p]], [[1lqe|1lqe]], [[1max|1max]], [[1may|1may]], [[1mts|1mts]], [[1mtu|1mtu]], [[1mtv|1mtv]], [[1mtw|1mtw]], [[1n6x|1n6x]], [[1n6y|1n6y]], [[1nc6|1nc6]], [[1ntp|1ntp]], [[1o2h|1o2h]], [[1o2i|1o2i]], [[1o2j|1o2j]], [[1o2k|1o2k]], [[1o2l|1o2l]], [[1o2m|1o2m]], [[1o2n|1o2n]], [[1o2o|1o2o]], [[1o2p|1o2p]], [[1o2q|1o2q]], [[1o2r|1o2r]], [[1o2s|1o2s]], [[1o2t|1o2t]], [[1o2u|1o2u]], [[1o2v|1o2v]], [[1o2w|1o2w]], [[1o2x|1o2x]], [[1o2y|1o2y]], [[1o2z|1o2z]], [[1o30|1o30]], [[1o31|1o31]], [[1o32|1o32]], [[1o33|1o33]], [[1o34|1o34]], [[1o35|1o35]], [[1o36|1o36]], [[1o37|1o37]], [[1o38|1o38]], [[1o39|1o39]], [[1o3a|1o3a]], [[1o3b|1o3b]], [[1o3c|1o3c]], [[1o3d|1o3d]], [[1o3e|1o3e]], [[1o3f|1o3f]], [[1o3g|1o3g]], [[1o3h|1o3h]], [[1o3i|1o3i]], [[1o3j|1o3j]], [[1o3k|1o3k]], [[1o3l|1o3l]], [[1o3m|1o3m]], [[1o3n|1o3n]], [[1o3o|1o3o]], [[1oph|1oph]], [[1ox1|1ox1]], [[1oyq|1oyq]], [[1p2i|1p2i]], [[1p2j|1p2j]], [[1p2k|1p2k]], [[1ppc|1ppc]], [[1ppe|1ppe]], [[1pph|1pph]], [[1qa0|1qa0]], [[1qb1|1qb1]], [[1qb6|1qb6]], [[1qb9|1qb9]], [[1qbn|1qbn]], [[1qbo|1qbo]], [[1qcp|1qcp]], [[1ql7|1ql7]], [[1ql8|1ql8]], [[1rxp|1rxp]], [[1s0q|1s0q]], [[1s0r|1s0r]], [[1sbw|1sbw]], [[1sfi|1sfi]], [[1smf|1smf]], [[1tab|1tab]], [[1taw|1taw]], [[1tgb|1tgb]], [[1tgc|1tgc]], [[1tgn|1tgn]], [[1tgs|1tgs]], [[1tgt|1tgt]], [[1tio|1tio]], [[1tld|1tld]], [[1tng|1tng]], [[1tnh|1tnh]], [[1tni|1tni]], [[1tnj|1tnj]], [[1tnk|1tnk]], [[1tnl|1tnl]], [[1tpa|1tpa]], [[1tpo|1tpo]], [[1tpp|1tpp]], [[1tps|1tps]], [[1tx7|1tx7]], [[1tx8|1tx8]], [[1tyn|1tyn]], [[1utn|1utn]], [[1uto|1uto]], [[1utp|1utp]], [[1utq|1utq]], [[1v2j|1v2j]], [[1v2k|1v2k]], [[1v2l|1v2l]], [[1v2m|1v2m]], [[1v2n|1v2n]], [[1v2o|1v2o]], [[1v2p|1v2p]], [[1v2q|1v2q]], [[1v2r|1v2r]], [[1v2s|1v2s]], [[1v2t|1v2t]], [[1v2u|1v2u]], [[1v2v|1v2v]], [[1v2w|1v2w]], [[1xuf|1xuf]], [[1xug|1xug]], [[1xuh|1xuh]], [[1xui|1xui]], [[1xuj|1xuj]], [[1xuk|1xuk]], [[1y3u|1y3u]], [[1y3v|1y3v]], [[1y3w|1y3w]], [[1y3x|1y3x]], [[1y3y|1y3y]], [[1y59|1y59]], [[1y5a|1y5a]], [[1y5b|1y5b]], [[1y5u|1y5u]], [[1yp9|1yp9]], [[1yyy|1yyy]], [[1zr0|1zr0]], [[1zzz|1zzz]], [[2a7h|2a7h]], [[2ah4|2ah4]], [[2ayw|2ayw]], [[2blv|2blv]], [[2blw|2blw]], [[2btc|2btc]], [[2by5|2by5]], [[2by6|2by6]], [[2by7|2by7]], [[2by8|2by8]], [[2by9|2by9]], [[2bya|2bya]], [[2bza|2bza]], [[2cmy|2cmy]], [[2fi3|2fi3]], [[2fi4|2fi4]], [[2fi5|2fi5]], [[2ftl|2ftl]], [[2ftm|2ftm]], [[2fx4|2fx4]], [[2fx6|2fx6]], [[2ptc|2ptc]], [[2ptn|2ptn]], [[2tga|2tga]], [[2tgd|2tgd]], [[2tgp|2tgp]], [[2tgt|2tgt]], [[2tio|2tio]], [[2tld|2tld]], [[2tpi|2tpi]], [[3btd|3btd]], [[3bte|3bte]], [[3btf|3btf]], [[3btg|3btg]], [[3bth|3bth]], [[3btk|3btk]], [[3btm|3btm]], [[3btq|3btq]], [[3btt|3btt]], [[3btw|3btw]], [[3ptb|3ptb]], [[3ptn|3ptn]], [[3tpi|3tpi]], [[4tpi|4tpi]], [[5ptp|5ptp]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1aq7|1aq7]], [[1auj|1auj]], [[1az8|1az8]], [[1bju|1bju]], [[1bjv|1bjv]], [[1btp|1btp]], [[1btw|1btw]], [[1btx|1btx]], [[1bty|1bty]], [[1btz|1btz]], [[1c1n|1c1n]], [[1c1o|1c1o]], [[1c1p|1c1p]], [[1c1q|1c1q]], [[1c1r|1c1r]], [[1c1s|1c1s]], [[1c1t|1c1t]], [[1c2d|1c2d]], [[1c2e|1c2e]], [[1c2f|1c2f]], [[1c2g|1c2g]], [[1c2h|1c2h]], [[1c2i|1c2i]], [[1c2j|1c2j]], [[1c2k|1c2k]], [[1c2l|1c2l]], [[1c2m|1c2m]], [[1c5p|1c5p]], [[1c5q|1c5q]], [[1c5r|1c5r]], [[1c5s|1c5s]], [[1c5t|1c5t]], [[1c5u|1c5u]], [[1c5v|1c5v]], [[1c9t|1c9t]], [[1ce5|1ce5]], [[1cu7|1cu7]], [[1cu8|1cu8]], [[1cu9|1cu9]], [[1d6r|1d6r]], [[1eb2|1eb2]], [[1ejm|1ejm]], [[1ezx|1ezx]], [[1f0t|1f0t]], [[1f0u|1f0u]], [[1f2s|1f2s]], [[1g36|1g36]], [[1g3b|1g3b]], [[1g3c|1g3c]], [[1g3d|1g3d]], [[1g3e|1g3e]], [[1g9i|1g9i]], [[1gbt|1gbt]], [[1ghz|1ghz]], [[1gi0|1gi0]], [[1gi1|1gi1]], [[1gi2|1gi2]], [[1gi3|1gi3]], [[1gi4|1gi4]], [[1gi5|1gi5]], [[1gi6|1gi6]], [[1gj6|1gj6]], [[1hj9|1hj9]], [[1j8a|1j8a]], [[1jir|1jir]], [[1jrs|1jrs]], [[1jrt|1jrt]], [[1k1i|1k1i]], [[1k1j|1k1j]], [[1k1l|1k1l]], [[1k1m|1k1m]], [[1k1n|1k1n]], [[1k1o|1k1o]], [[1k1p|1k1p]], [[1lqe|1lqe]], [[1max|1max]], [[1may|1may]], [[1mts|1mts]], [[1mtu|1mtu]], [[1mtv|1mtv]], [[1mtw|1mtw]], [[1n6x|1n6x]], [[1n6y|1n6y]], [[1nc6|1nc6]], [[1ntp|1ntp]], [[1o2h|1o2h]], [[1o2i|1o2i]], [[1o2j|1o2j]], [[1o2k|1o2k]], [[1o2l|1o2l]], [[1o2m|1o2m]], [[1o2n|1o2n]], [[1o2o|1o2o]], [[1o2p|1o2p]], [[1o2q|1o2q]], [[1o2r|1o2r]], [[1o2s|1o2s]], [[1o2t|1o2t]], [[1o2u|1o2u]], [[1o2v|1o2v]], [[1o2w|1o2w]], [[1o2x|1o2x]], [[1o2y|1o2y]], [[1o2z|1o2z]], [[1o30|1o30]], [[1o31|1o31]], [[1o32|1o32]], [[1o33|1o33]], [[1o34|1o34]], [[1o35|1o35]], [[1o36|1o36]], [[1o37|1o37]], [[1o38|1o38]], [[1o39|1o39]], [[1o3a|1o3a]], [[1o3b|1o3b]], [[1o3c|1o3c]], [[1o3d|1o3d]], [[1o3e|1o3e]], [[1o3f|1o3f]], [[1o3g|1o3g]], [[1o3h|1o3h]], [[1o3i|1o3i]], [[1o3j|1o3j]], [[1o3k|1o3k]], [[1o3l|1o3l]], [[1o3m|1o3m]], [[1o3n|1o3n]], [[1o3o|1o3o]], [[1oph|1oph]], [[1ox1|1ox1]], [[1oyq|1oyq]], [[1p2i|1p2i]], [[1p2j|1p2j]], [[1p2k|1p2k]], [[1ppc|1ppc]], [[1ppe|1ppe]], [[1pph|1pph]], [[1qa0|1qa0]], [[1qb1|1qb1]], [[1qb6|1qb6]], [[1qb9|1qb9]], [[1qbn|1qbn]], [[1qbo|1qbo]], [[1qcp|1qcp]], [[1ql7|1ql7]], [[1ql8|1ql8]], [[1rxp|1rxp]], [[1s0q|1s0q]], [[1s0r|1s0r]], [[1sbw|1sbw]], [[1sfi|1sfi]], [[1smf|1smf]], [[1tab|1tab]], [[1taw|1taw]], [[1tgb|1tgb]], [[1tgc|1tgc]], [[1tgn|1tgn]], [[1tgs|1tgs]], [[1tgt|1tgt]], [[1tio|1tio]], [[1tld|1tld]], [[1tng|1tng]], [[1tnh|1tnh]], [[1tni|1tni]], [[1tnj|1tnj]], [[1tnk|1tnk]], [[1tnl|1tnl]], [[1tpa|1tpa]], [[1tpo|1tpo]], [[1tpp|1tpp]], [[1tps|1tps]], [[1tx7|1tx7]], [[1tx8|1tx8]], [[1tyn|1tyn]], [[1utn|1utn]], [[1uto|1uto]], [[1utp|1utp]], [[1utq|1utq]], [[1v2j|1v2j]], [[1v2k|1v2k]], [[1v2l|1v2l]], [[1v2m|1v2m]], [[1v2n|1v2n]], [[1v2o|1v2o]], [[1v2p|1v2p]], [[1v2q|1v2q]], [[1v2r|1v2r]], [[1v2s|1v2s]], [[1v2t|1v2t]], [[1v2u|1v2u]], [[1v2v|1v2v]], [[1v2w|1v2w]], [[1xuf|1xuf]], [[1xug|1xug]], [[1xuh|1xuh]], [[1xui|1xui]], [[1xuj|1xuj]], [[1xuk|1xuk]], [[1y3u|1y3u]], [[1y3v|1y3v]], [[1y3w|1y3w]], [[1y3x|1y3x]], [[1y3y|1y3y]], [[1y59|1y59]], [[1y5a|1y5a]], [[1y5b|1y5b]], [[1y5u|1y5u]], [[1yp9|1yp9]], [[1yyy|1yyy]], [[1zr0|1zr0]], [[1zzz|1zzz]], [[2a7h|2a7h]], [[2ah4|2ah4]], [[2ayw|2ayw]], [[2blv|2blv]], [[2blw|2blw]], [[2btc|2btc]], [[2by5|2by5]], [[2by6|2by6]], [[2by7|2by7]], [[2by8|2by8]], [[2by9|2by9]], [[2bya|2bya]], [[2bza|2bza]], [[2cmy|2cmy]], [[2fi3|2fi3]], [[2fi4|2fi4]], [[2fi5|2fi5]], [[2ftl|2ftl]], [[2ftm|2ftm]], [[2fx4|2fx4]], [[2fx6|2fx6]], [[2ptc|2ptc]], [[2ptn|2ptn]], [[2tga|2tga]], [[2tgd|2tgd]], [[2tgp|2tgp]], [[2tgt|2tgt]], [[2tio|2tio]], [[2tld|2tld]], [[2tpi|2tpi]], [[3btd|3btd]], [[3bte|3bte]], [[3btf|3btf]], [[3btg|3btg]], [[3bth|3bth]], [[3btk|3btk]], [[3btm|3btm]], [[3btq|3btq]], [[3btt|3btt]], [[3btw|3btw]], [[3ptb|3ptb]], [[3ptn|3ptn]], [[3tpi|3tpi]], [[4tpi|4tpi]], [[5ptp|5ptp]]</div></td></tr> | ||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http:// | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2j9n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2j9n OCA], [http://pdbe.org/2j9n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2j9n RCSB], [http://www.ebi.ac.uk/pdbsum/2j9n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2j9n ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
Line 31: | Line 31: | ||
==See Also== | ==See Also== | ||
*[[Trypsin|Trypsin]] | *[[Trypsin 3D structures|Trypsin 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> |
Revision as of 07:56, 19 November 2020
Robotically harvested Trypsin complexed with Benzamidine containing polypeptide mediated crystal contactsRobotically harvested Trypsin complexed with Benzamidine containing polypeptide mediated crystal contacts
Structural highlightsEvolutionary Conservation![]() Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. Publication Abstract from PubMedHigh-throughput crystallography has reached a level of automation where complete computer-assisted robotic crystallization pipelines are capable of cocktail preparation, crystallization plate setup, and inspection and interpretation of results. While mounting of crystal pins, data collection and structure solution are highly automated, crystal harvesting and cryocooling remain formidable challenges towards full automation. To address the final frontier in achieving fully automated high-throughput crystallography, the prototype of an anthropomorphic six-axis universal micromanipulation robot (UMR) has been designed and tested; this UMR is capable of operator-assisted harvesting and cryoquenching of protein crystals as small as 10 microm from a variety of 96-well plates. The UMR is equipped with a versatile tool exchanger providing full operational flexibility. Trypsin crystals harvested and cryoquenched using the UMR have yielded a 1.5 A structure demonstrating the feasibility of robotic protein crystal harvesting. Operator-assisted harvesting of protein crystals using a universal micromanipulation robot.,Viola R, Carman P, Walsh J, Miller E, Benning M, Frankel D, McPherson A, Cudney B, Rupp B J Appl Crystallogr. 2007 Jun 1;40(Pt 3):539-545. Epub 2007 May 15. PMID:19461845[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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