User:Eric Martz/Cavities tests: Difference between revisions

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*<scene name='31/319439/Surface_test/1'>Surface test 1</scene>
*<scene name='31/319439/Surface_test/1'>Surface test 1</scene>
*<scene name='31/319439/6zgi_cavities/1'>Cavities in coronavirus spike protein 6zgi</scene>. Took 8.5 min to generate with the command "isosurface minset 100 interior cavity 3.0 10.0".
 
 
Tested in Firefox (current version) on macOS Mojave, mid-2014 MacBook Pro, 2.2 GHz Intel Core i7.
 
 
*<scene name='31/319439/6zgi_cavities/1'>Cavities in coronavirus spike protein 6zgi</scene>. It took 8.5 min to generate the cavity isosurfaces after I entered the command "isosurface minset 100 interior cavity 3.0 10.0" into the command slot in the SAT. (This command takes ~45 sec in the Jmol Java app which is therefore 11-fold faster for this operation.) After clicking this green link, I waited 11 min and the scene still did not appear. So I think the isosurfaces are being generated again when the green link is clicked.


</StructureSection>
</StructureSection>

Revision as of 23:41, 11 August 2020



Tested in Firefox (current version) on macOS Mojave, mid-2014 MacBook Pro, 2.2 GHz Intel Core i7.


  • . It took 8.5 min to generate the cavity isosurfaces after I entered the command "isosurface minset 100 interior cavity 3.0 10.0" into the command slot in the SAT. (This command takes ~45 sec in the Jmol Java app which is therefore 11-fold faster for this operation.) After clicking this green link, I waited 11 min and the scene still did not appear. So I think the isosurfaces are being generated again when the green link is clicked.


Escherichia coli reca protein-bound DNA (PDB entry 3rec)

Drag the structure with the mouse to rotate