Chitinase 3D structures: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
Michal Harel (talk | contribs)
No edit summary
Michal Harel (talk | contribs)
No edit summary
Line 8: Line 8:
**[[5hbf]] – hChi - human<br />
**[[5hbf]] – hChi - human<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
**[[4wjx]], [[4wka]] – hChi catalytic domain<br />
**[[4tx7]] – Chi – yard-long bean<br />
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3aro]], [[3b8s]] – VhChi residues 22-597 – ''Vibrio harveyi''<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
**[[3b9e]] - VhChi residues 22-597 (mutant)<br />
**[[1k85]] – BcChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
**[[1k85]] – BciChi fibronectin domain – ''Bacillus circulans'' – NMR<br />
**[[1itx]] - BcChi catalytic domain<br />
**[[1itx]] - BciChi catalytic domain<br />
**[[1ed7]] – BcChi chitin-binding domain - NMR<br />
**[[1ed7]] – BciChi chitin-binding domain - NMR<br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1ll6]], [[1ll7]] - CiChi residues 36-427 (mutant) – ''Coccicioides immitis'' <br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[1d2k]] - CiChi residues 36-427<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3n11]] – BcChi – ''Bacillus cereus''<br />
**[[3iwr]], [[2dkv]] – Chi residues 33-340 – Japanese rice<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3g6l]] - BoChi residues 21-426 – ''Bionectria ochroleuca''<br />
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
**[[3oa5]], [[4dws]], [[4a5q]] – Chi – ''Yersinia entomophaga''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mpi]] – HbChi chitin-binding domain – ''Hevea brasiliensis''<br />
**[[4mst]] – HbChi catalytic domain <br />
**[[4mst]] – HbChi catalytic domain <br />
**[[4tx7]] – Chi – yard-long bean<br />


*''Chitinase I binary complex''
*''Chitinase I binary complex''


**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]] – hChi catalytic domain + inhibitor<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC - corn borer<br />
**[[3wl0]] – cbChi (mutant) + GlcNAC<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3arp]], [[3arq]], [[3arr]], [[3ars]], [[3art]], [[3aru]], [[3arv]], [[3arw]], [[3arx]], [[3ary]], [[3arz]] – VhChi residues 22-597 + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
**[[3as0]], [[3as1]], [[3as2]], [[3as3]] – VhChi residues 22-597 (mutant) + inhibitor<br />
Line 33: Line 37:
**[[3n1a]] - BcChi (mutant) + inhibitor<br />  
**[[3n1a]] - BcChi (mutant) + inhibitor<br />  
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
**[[3g6m]] - BoChi residues 21-426 + caffeine<br />
**[[1waw]], [[1wb0]], [[4wk9]], [[4wkf]], [[4wkh]] – hChi catalytic domain + polypeptide – human<br />
**[[1hkk]], [[1hkm]], [[3rm4]], [[3rm8]], [[3rm9]], [[3rme]], [[5nrf]], [[5nra]], [[5nr8]] – hChi catalytic domain + inhibitor<br />
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[1ll4]] - CiChi residues 36-427 + inhibitor<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
**[[3wl1]], [[3wqv]], [[3wqw]] – cbChi + GlcNAC<br />
Line 41: Line 43:
*Chitinase II
*Chitinase II


**[[5y29]] – cbChi catalytic domain 1 residues 1606-1992 <br />
**[[5y2a]] – cbChi catalytic domain 2 residues 2056-2438<br />
**[[1dxj]] – Chi – Jack bean<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1e15]], [[3wd0]] - SmChi<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1ogb]], [[1goi]], [[1e6p]] - SmChi (mutant)<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
**[[1kfw]] – Chi catalytic domain – Arthrobacter<br />
**[[1dxj]] – Chi – Jack bean<br />
**[[5y29]] – OfChi catalytic domain 1 residues 1606-1992 – ''Ostrinia furnacalis''<br />
**[[5y2a]] – OfChi catalytic domain 2 residues 2056-2438<br />


*''Chitinase II binary complex''
*''Chitinase II binary complex''


**[[5y2b]] – cbChi catalytic domain 1 + acetylchitooctaose<br />
**[[5y2c]] – cbChi catalytic domain 2 (mutant)  + acetylchitooctaose<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1ogg]], [[1ur9]] - SmChi (mutant) + inhibitor<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
**[[1e6n]] - SmChi (mutant) + polysaccharide<br />
Line 56: Line 60:
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[2a3a]], [[2a3b]], [[2a3c]], [[2a3e]] – AfChi + inhibitor<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
**[[1w1p]], [[1w1t]], [[1w1v]], [[1w1y]], [[1o6i]], [[1h0g]], [[1h0i]] – SmChi + polypeptide<br />
**[[5y2b]] – OfChi catalytic domain 1 + acetylchitooctaose<br />
**[[5y2c]] – OfChi catalytic domain 2 (mutant)  + acetylchitooctaose<br />


*Chitinase III
*Chitinase III


**[[5wup]] – cbChi residues 1-482<br />
**[[5wv8]] – cbChi residues 1-482 (mutant)<br />
**[[5wv9]] – cbChi residues 1-482 + GlcNAc<br />
**[[5wvb]] – cbChi residues 1-482 (mutant) + GlcNAc<br />
**[[5wus]] – cbChi residues 528-987<br />
**[[5wvf]] – cbChi residues 528-987 (mutant)<br />
**[[5wvh]] – cbChi residues 528-987 + GlcNAc<br />
**[[5wvg]] – cbChi residues 528-987 (mutant) + GlcNAc<br />
**[[4toq]] – Chi - pomegrenate<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[2dbt]], [[1wvu]] – SgChi residues 30-294 – ''Streptomyces griseus''<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
**[[1wvv]] - SgChi residues 30-294 (mutant)<br />
Line 66: Line 77:
**[[2xvp]] – AfChi<br />
**[[2xvp]] – AfChi<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
**[[2xtk]], [[4tx6]] – AfChi + inhibitor<br />
**[[4toq]] – Chi - pomegrenate<br />
**[[5wup]] – OfChi residues 1-482<br />
**[[5wv8]] – OfChi residues 1-482 (mutant)<br />
**[[5wv9]] – OfChi residues 1-482 + GlcNAc<br />
**[[5wvb]] – OfChi residues 1-482 (mutant) + GlcNAc<br />
**[[5wus]] – OfChi residues 528-987<br />
**[[5wvf]] – OfChi residues 528-987 (mutant)<br />
**[[5wvh]] – OfChi residues 528-987 + GlcNAc<br />
**[[5wvg]] – OfChi residues 528-987 (mutant) + GlcNAc<br />


*Chitinase IV
*Chitinase IV
Line 102: Line 104:
*Chitinase A
*Chitinase A


**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnj]], [[4r5e]] – spChiA – sago palm<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnk]] – spChiA + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
**[[4mnl]], [[4mnm]] – spChiA (mutant) + GlcNAC<br />
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5dez]] – ApChiA + NAG – ''Autographa polyhedrosis''<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[5df0]] – ApChiA + NAG + chitotriothiazoline<br />
**[[5bum]] – ChiA LYSM domain – field horsetail<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1edq]], [[1ctn]], [[5zl9]], [[5z7o]], [[5z7n]], [[5z7m]] - SmChiA – ''Serratia marcescens''<br />
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
**[[1x6l]], [[1rd6]] – SmChiA (mutant)<br />
Line 117: Line 117:
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4pxv]], [[5ylg]] – PrChiA LYSM domain – ''Pteris ryukuensis''<br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[4rl3]] – PrChiA catalytic domain <br />
**[[3wh1]], [[3wij]] – BcChiA + GlcNAC – ''Bryum coronatum''<br />
**[[4ij4]] – BcChiA (mutant) + GlcNAC <br />


*Chitinase B
*Chitinase B
Line 137: Line 139:
*Other chitinases
*Other chitinases


**[[3fxy]] - hChi catalytic domain<br />
**[[1lq0]] - hChi residues 22-286<br />
**[[1guv]] - hChi residues 22-387<br />
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
**[[3cql]] – Chi – ''Carica papaya''<br />
**[[1cns]] – Chi – barley<br />
**[[3w3e]] – Chi – cowpea<br />
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[1wno]], [[1w9p]] - AfChi<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[2dsk]] - PfChi catalytic domain – ''Pyrococcus furiosus''<br />
**[[3afb]] - PfChi catalytic domain (mutant)<br />  
**[[3afb]] - PfChi catalytic domain (mutant)<br />  
**[[1cns]] – Chi – ''Hordeum vulgare''<br />
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2czn]], [[2rts]] - PfChi chitin-binding domain – NMR<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[2cwr]] - PfChi chitin-binding domain<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
**[[3ian]] – Chi (mutant) – ''Lactococcus lactis''<br />
**[[3fxy]] - hChi catalytic domain<br />
**[[1lq0]] - hChi residues 22-286<br />
**[[1guv]] - hChi residues 22-387<br />
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
**[[3fnd]], [[3co4]] – Chi – ''Bacteroides thetaiotamicron''<br />
**[[3cql]] – Chi – ''Carica papaya''<br />
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z37]] - BjChi catalytic domain – ''Brassica juncea''<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
**[[2z39]] – BjChi catalytic domain (mutant)<br />
**[[2uy2]] – yChi residues 22-315 – yeast<br />
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4hmc]] – MmChi 60 – ''Moritella marina''<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
**[[4mb3]] – MmChi 60 (mutant)<br />
**[[3w3e]] – Chi – cowpea<br />
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6b]] – RaChi catalytic domain – ''Ralstonia''<br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
**[[3w6e]] – RaChi catalytic domain (mutant) <br />
Line 169: Line 172:
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[5k2l]] – Chi LYSM domain – ''Volvox carteri''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6idn]] – Chi – ''Ipomoea carnea''<br />
**[[6g9c]], [[6g9e]] – Chi – pig whipworm<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[6bt9]] – Chi – ''Bacillus thuringesis''<br />
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
**[[5yuq]], [[5xwq]], [[5xwf]] – Chi – ''Rhizomucor miehei''<br />
Line 175: Line 177:
*''Other chitinases  binary complex''
*''Other chitinases  binary complex''


**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg1]] - hChi residues 22-387 + chitobiose<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[1lg2]] - hChi residues 22-387 + ethylene glycol<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[3fy1]], [[2ybt]], [[2ybu]] - hChi catalytic domain + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
**[[1hki]], [[1hkj]] - hChi + inhibitor<br />
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
**[[2z38]] - BjChi catalytic domain + Cl<br />
**[[2uy3]], [[2uy4]], [[2uy5]] - yChi residues 22-315 + inhibitor<br />
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[1w9v]], [[1w9u]] - AfChi + polypeptide<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
**[[4hmd]] – MmChi 60 + intermediate<br />
Line 190: Line 191:
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsv]] - TcChi residues 321-805 – ''Thermococcus chitonophagus''<br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[5xsx]], [[5xsw]] - TcChi residues 321-805 + substrate <br />
**[[3a4w]], [[3a4x]] – PfChi catalytic domain (mutant) + NAG<br />
}}
}}


[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 12:43, 5 July 2020

3D Structures of Chitinase3D Structures of Chitinase

Updated on 05-July-2020

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Joel L. Sussman