5eq7: Difference between revisions
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==Crystal structure of Medicago truncatula Histidinol-Phosphate Phosphatase (MtHPP) in complex with free phosphate== | ==Crystal structure of Medicago truncatula Histidinol-Phosphate Phosphatase (MtHPP) in complex with free phosphate== | ||
<StructureSection load='5eq7' size='340' side='right' caption='[[5eq7]], [[Resolution|resolution]] 1.19Å' scene=''> | <StructureSection load='5eq7' size='340' side='right'caption='[[5eq7]], [[Resolution|resolution]] 1.19Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[5eq7]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EQ7 OCA]. For a <b>guided tour on the structure components</b> use [http:// | <table><tr><td colspan='2'>[[5eq7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Barrel_medic Barrel medic]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EQ7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5EQ7 FirstGlance]. <br> | ||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLZ:N-METHYL-LYSINE'>MLZ</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5eq8|5eq8]], [[5eq9|5eq9]], [[5eqa|5eqa]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5eq8|5eq8]], [[5eq9|5eq9]], [[5eqa|5eqa]]</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http:// | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MTR_3g117220 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3880 Barrel medic])</td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5eq7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5eq7 OCA], [http://pdbe.org/5eq7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5eq7 RCSB], [http://www.ebi.ac.uk/pdbsum/5eq7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5eq7 ProSAT]</span></td></tr> | |||
</table> | </table> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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</div> | </div> | ||
<div class="pdbe-citations 5eq7" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 5eq7" style="background-color:#fffaf0;"></div> | ||
==See Also== | |||
*[[Inositol monophosphatase 3D structures|Inositol monophosphatase 3D structures]] | |||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Barrel medic]] | |||
[[Category: Large Structures]] | |||
[[Category: Dauter, Z]] | [[Category: Dauter, Z]] | ||
[[Category: Ruszkowski, M]] | [[Category: Ruszkowski, M]] | ||
Revision as of 10:09, 22 April 2020
Crystal structure of Medicago truncatula Histidinol-Phosphate Phosphatase (MtHPP) in complex with free phosphateCrystal structure of Medicago truncatula Histidinol-Phosphate Phosphatase (MtHPP) in complex with free phosphate
Structural highlights
Publication Abstract from PubMedThe penultimate enzyme in the histidine biosynthetic pathway catalyzes dephosphorylation of L-histidinol 1-phosphate (HOLP) into L-histidinol (HOL). The recently discovered in Arabidopsis thaliana plant-type histidinol-phosphate phosphatase (HPP) shares no homology with the two other HPP superfamilies known previously in prokaryotes, and resembles myo-inositol monophosphatases (IMPases). In this work, identification of a HPP enzyme from a model legume, Medicago truncatula (MtHPP) was based on highest sequence identity to A. thaliana enzyme. Biochemical assays confirmed that MtHPP was able to cleave inorganic phosphate from HOLP but not from D-myo-inositol-1-phosphate (IMP), main substrate of IMPases. Dimers of MtHPP, determined by size-exclusion chromatography, in the presence of CO2 or formaldehyde form mutual, methylene-bridged cross-links between Lys158 and Cys245 residues. Four high resolution crystal structures, namely complexes with: HOLP (substrate), HOL (product), PO43- (by-product), as well as the structure showing the cross-linking between two MtHPP molecules, provide detailed structural information on the enzyme. Based on the crystal structures, the enzymatic reaction mechanism of IMPases is accustomed to fit the data for MtHPP. The enzymatic reaction, which requires Mg2+ cations, is catalyzed mainly by amino acid residues from the N-terminal domain. C-terminal domain, sharing little identity to IMPases, is responsible for the substrate specificity, that is, allows the enzyme to distinguish between HOLP and IMP. Structural features, mainly the presence of a conserved Asp246, allow MtHPP to bind HOLP specifically. Structural studies of Medicago truncatula histidinol-phosphate phosphatase from inositol monophosphatase superfamily reveal details of penultimate step of histidine biosynthesis in plants.,Ruszkowski M, Dauter Z J Biol Chem. 2016 Mar 18. pii: jbc.M115.708727. PMID:26994138[1] From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine. See AlsoReferences
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