User:Ramiro Barrantes/FpgNeiRepair: Difference between revisions
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! Functional Cluster !! State 1 !! State 2 !! Fpg1 !! Fpg2 !! Plant !! Neil1 !! Neil2 !! Neil3 !! Proteo !! Actino1 !! Actino2 !! MimiVirus | ! Functional Cluster !! State 1 !! State 2 !! Fpg1 !! Fpg2 !! Plant !! Neil1 !! Neil2 !! Neil3 !! Proteo !! Actino1 !! Actino2 !! MimiVirus | ||
|- | |- | ||
| Support for perfectly conserved | | Support for perfectly conserved residue | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Lys160asp178/13' target="fpg">Lys160 and Asp178</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Lys160asp178/13' target="fpg">Lys160 and Asp178</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Econeiarginine171/10' target="ecoNei">Arg171</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Econeiarginine171/10' target="ecoNei">Arg171</scene> | ||
| 1 || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 0 || 0 | | 1 || 1 || 1 || 0 || 0 || 0 || 0 || 0 || 0 || 0 | ||
|- | |- | ||
| | | Stability of catalytic helix | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgglu8arg57leu4triad/8' target="fpg">Leu4,Glu8,Arg57</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgglu8arg57leu4triad/8' target="fpg">Leu4,Glu8,Arg57</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Econeisupporttriadcounterpart/5' target="ecoNei">Different</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Econeisupporttriadcounterpart/5' target="ecoNei">Different</scene> | ||
| 1 || 1 || 1 || - || - || - || - || - || - || - | | 1 || 1 || 1 || - || - || - || - || - || - || - | ||
|- | |- | ||
| | | Neil1-specific: Stability of Lys60 | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgneil1covariate/5' target="fpg">E137,R58,G135,L134</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgneil1covariate/5' target="fpg">E137,R58,G135,L134</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Neil1lys60support/3' target="ecoNei">Covariation with Asn172</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Neil1lys60support/3' target="ecoNei">Covariation with Asn172</scene> | ||
| 1 || 1 || 1|| 0 || 1 || 1 || 1 || 1 || 1 || 1 | | 1 || 1 || 1|| 0 || 1 || 1 || 1 || 1 || 1 || 1 | ||
|- | |- | ||
| | | Intercalation loop | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Fpgintercalationloop/3' target="fpg">D110,F108,R113,R112,F114</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Fpgintercalationloop/3' target="fpg">D110,F108,R113,R112,F114</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Econeiintercalationloop/4' target="ecoNei">Gln76,Met77,Tyr78</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Econeiintercalationloop/4' target="ecoNei">Gln76,Met77,Tyr78</scene> | ||
| 1 || 1 || 1 || - || - || - || - || - || - || 1 | | 1 || 1 || 1 || - || - || - || - || - || - || 1 | ||
|- | |- | ||
| | | PlantFungi-specific: R254 DNA binding | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgtyr243/4' target="fpg">Y242,G243,R244</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgtyr243/4' target="fpg">Y242,G243,R244</scene> | ||
| different in plants | | different in plants | ||
| 1 || 1 || 0 || 1 || 1 || 1 || 2 || 1 || 1 || 1 | | 1 || 1 || 0 || 1 || 1 || 1 || 2 || 1 || 1 || 1 | ||
|- | |- | ||
| | | Zinc/zincless finger | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgzincfinger/6' target="fpg">Zinc finger</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgzincfinger/6' target="fpg">Zinc finger</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Neil1zinclessfinger/5' target="ecoNei">Neil1 zincless finger</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Neil1zinclessfinger/5' target="ecoNei">Neil1 zincless finger</scene> | ||
| 1 || 1 || - || - || 1 || 1 || 1 || 1 || 1 || - | | 1 || 1 || - || - || 1 || 1 || 1 || 1 || 1 || - | ||
|- | |- | ||
| | | Recognition complex | ||
| <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgrecognitioncomplex/1' target="fpg">Loop from Gly218 to Gly233</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/Gstfpgrecognitioncomplex/1' target="fpg">Loop from Gly218 to Gly233</scene> | ||
| <scene name='User:Ramiro_Barrantes/Workbench/LSCs/Neil1helixalpha10beta9/1' target="ecoNei">Helix in Neil1</scene> | | <scene name='User:Ramiro_Barrantes/Workbench/LSCs/Neil1helixalpha10beta9/1' target="ecoNei">Helix in Neil1</scene> | ||