4wf5: Difference between revisions

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==Crystal structure of E.Coli DsbA soaked with compound 4==
==Crystal structure of E.Coli DsbA soaked with compound 4==
<StructureSection load='4wf5' size='340' side='right' caption='[[4wf5]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
<StructureSection load='4wf5' size='340' side='right'caption='[[4wf5]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[4wf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_bl21(de3) Escherichia coli bl21(de3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WF5 FirstGlance]. <br>
<table><tr><td colspan='2'>[[4wf5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_bl21(de3) Escherichia coli bl21(de3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WF5 FirstGlance]. <br>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Adams, L A]]
[[Category: Adams, L A]]
[[Category: Caria, S]]
[[Category: Caria, S]]

Revision as of 10:44, 4 March 2020

Crystal structure of E.Coli DsbA soaked with compound 4Crystal structure of E.Coli DsbA soaked with compound 4

Structural highlights

4wf5 is a 2 chain structure with sequence from Escherichia coli bl21(de3). Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, , ,
Activity:Protein-disulfide reductase (glutathione), with EC number 1.8.4.2
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

The thiol-disulfide oxidoreductase enzyme DsbA catalyzes the formation of disulfide bonds in the periplasm of Gram-negative bacteria. DsbA substrates include proteins involved in bacterial virulence. In the absence of DsbA, many of these proteins do not fold correctly, which renders the bacteria avirulent. Thus DsbA is a critical mediator of virulence and inhibitors may act as antivirulence agents. Biophysical screening has been employed to identify fragments that bind to DsbA from Escherichia coli. Elaboration of one of these fragments produced compounds that inhibit DsbA activity in vitro. In cell-based assays, the compounds inhibit bacterial motility, but have no effect on growth in liquid culture, which is consistent with selective inhibition of DsbA. Crystal structures of inhibitors bound to DsbA indicate that they bind adjacent to the active site. Together, the data suggest that DsbA may be amenable to the development of novel antibacterial compounds that act by inhibiting bacterial virulence.

Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA.,Adams LA, Sharma P, Mohanty B, Ilyichova OV, Mulcair MD, Williams ML, Gleeson EC, Totsika M, Doak BC, Caria S, Rimmer K, Horne J, Shouldice SR, Vazirani M, Headey SJ, Plumb BR, Martin JL, Heras B, Simpson JS, Scanlon MJ Angew Chem Int Ed Engl. 2014 Dec 30. doi: 10.1002/anie.201410341. PMID:25556635[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Adams LA, Sharma P, Mohanty B, Ilyichova OV, Mulcair MD, Williams ML, Gleeson EC, Totsika M, Doak BC, Caria S, Rimmer K, Horne J, Shouldice SR, Vazirani M, Headey SJ, Plumb BR, Martin JL, Heras B, Simpson JS, Scanlon MJ. Application of Fragment-Based Screening to the Design of Inhibitors of Escherichia coli DsbA. Angew Chem Int Ed Engl. 2014 Dec 30. doi: 10.1002/anie.201410341. PMID:25556635 doi:http://dx.doi.org/10.1002/anie.201410341

4wf5, resolution 1.45Å

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