6t8v: Difference between revisions

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'''Unreleased structure'''


The entry 6t8v is ON HOLD
==Complement factor B in complex with (S)-5,7-Dimethyl-4-((2-phenylpiperidin-1-yl)methyl)-1H-indole==
<StructureSection load='6t8v' size='340' side='right'caption='[[6t8v]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[6t8v]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T8V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6T8V FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MVK:4-[(2~{S})-1-[(5,7-dimethyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic+acid'>MVK</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alternative-complement-pathway_C3/C5_convertase Alternative-complement-pathway C3/C5 convertase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.47 3.4.21.47] </span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6t8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t8v OCA], [http://pdbe.org/6t8v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t8v RCSB], [http://www.ebi.ac.uk/pdbsum/6t8v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t8v ProSAT]</span></td></tr>
</table>
== Disease ==
[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:[http://omim.org/entry/612924 612924]]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.<ref>PMID:17182750</ref> <ref>PMID:20513133</ref> 
== Function ==
[[http://www.uniprot.org/uniprot/CFAB_HUMAN CFAB_HUMAN]] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The alternative pathway (AP) of the complement system is a key contributor to the pathogenesis of several human diseases including age-related macular degeneration, paroxysmal nocturnal hemoglobinuria (PNH), atypical hemolytic uremic syndrome (aHUS), and various glomerular diseases. The serine protease factor B (FB) is a key node in the AP and is integral to the formation of C3 and C5 convertase. Despite the prominent role of FB in the AP, selective orally bioavailable inhibitors, beyond our own efforts, have not been reported previously. Herein we describe in more detail our efforts to identify FB inhibitors by high-throughput screening (HTS) and leveraging insights from several X-ray cocrystal structures during optimization efforts. This work culminated in the discovery of LNP023 (41), which is currently being evaluated clinically in several diverse AP mediated indications.


Authors: Mainolfi, N., Ehara, T., Karki, R.G., Anderson, K., Mac Sweeney, A., Wiesmann, C., Adams, C., Mainolfi, N., Liao, S.-M., Argikar, U.A., Jendza, K., Zhang, C., Powers, J., Klosowski, D.W., Crowley, M., Kawanami, T., Ding, J., April, M., Forster, C., Serrano-Wu, M., Capparelli, M., Ramqaj, R., Solovay, C., Cumin, F., Smith, T.M., Ferrara, L., Lee, W., Long, D., Prentiss, M., De Erkenez, A., Yang, L., Fang, L., Sellner, H., Sirockin, F., Valeur, E., Erbel, P., Ramage, P., Gerhartz, B., Schubart, A., Flohr, S., Gradoux, N., Feifel, R., Vogg, B., Wiesmann, C., Maibaum, J., Eder, J., Sedrani, R., Harrison, R.A., Mogi, M., Jaffee, B.D., Adams, C.M.
Discovery of 4-((2S,4S)-4-Ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)be nzoic Acid (LNP023), a Factor B Inhibitor Specifically Designed To Be Applicable to Treating a Diverse Array of Complement Mediated Diseases.,Mainolfi N, Ehara T, Karki RG, Anderson K, Mac Sweeney A, Liao SM, Argikar UA, Jendza K, Zhang C, Powers J, Klosowski DW, Crowley M, Kawanami T, Ding J, April M, Forster C, Serrano-Wu M, Capparelli M, Ramqaj R, Solovay C, Cumin F, Smith TM, Ferrara L, Lee W, Long D, Prentiss M, De Erkenez A, Yang L, Liu F, Sellner H, Sirockin F, Valeur E, Erbel P, Ostermeier D, Ramage P, Gerhartz B, Schubart A, Flohr S, Gradoux N, Feifel R, Vogg B, Wiesmann C, Maibaum J, Eder J, Sedrani R, Harrison RA, Mogi M, Jaffee BD, Adams CM J Med Chem. 2020 Feb 19. doi: 10.1021/acs.jmedchem.9b01870. PMID:32073845<ref>PMID:32073845</ref>


Description: Complement factor B in complex with (S)-5,7-Dimethyl-4-((2-phenylpiperidin-1-yl)methyl)-1H-indole
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
[[Category: Unreleased Structures]]
</div>
<div class="pdbe-citations 6t8v" style="background-color:#fffaf0;"></div>
== References ==
<references/>
__TOC__
</StructureSection>
[[Category: Alternative-complement-pathway C3/C5 convertase]]
[[Category: Large Structures]]
[[Category: Adams, C]]
[[Category: Adams, C M]]
[[Category: Anderson, K]]
[[Category: April, M]]
[[Category: Argikar, U A]]
[[Category: Capparelli, M]]
[[Category: Crowley, M]]
[[Category: Cumin, F]]
[[Category: Cumin, F]]
[[Category: Adams, C]]
[[Category: Ding, J]]
[[Category: Eder, J]]
[[Category: Eder, J]]
[[Category: Sellner, H]]
[[Category: Ehara, T]]
[[Category: Capparelli, M]]
[[Category: Erbel, P]]
[[Category: Karki, R.G]]
[[Category: Erkenez, A De]]
[[Category: Jaffee, B.D]]
[[Category: Fang, L]]
[[Category: Gerhartz, B]]
[[Category: Mogi, M]]
[[Category: Sirockin, F]]
[[Category: Lee, W]]
[[Category: Powers, J]]
[[Category: Klosowski, D.W]]
[[Category: Wiesmann, C]]
[[Category: Feifel, R]]
[[Category: Feifel, R]]
[[Category: Ferrara, L]]
[[Category: Flohr, S]]
[[Category: Flohr, S]]
[[Category: Argikar, U.A]]
[[Category: Forster, C]]
[[Category: Valeur, E]]
[[Category: Gerhartz, B]]
[[Category: Fang, L]]
[[Category: Gradoux, N]]
[[Category: Harrison, R.A]]
[[Category: Harrison, R A]]
[[Category: Schubart, A]]
[[Category: Jaffee, B D]]
[[Category: Ramqaj, R]]
[[Category: Jendza, K]]
[[Category: Karki, R G]]
[[Category: Kawanami, T]]
[[Category: Kawanami, T]]
[[Category: Anderson, K]]
[[Category: Klosowski, D W]]
[[Category: April, M]]
[[Category: Lee, W]]
[[Category: Jendza, K]]
[[Category: Liao, S M]]
[[Category: Ehara, T]]
[[Category: Vogg, B]]
[[Category: Crowley, M]]
[[Category: Long, D]]
[[Category: Long, D]]
[[Category: Ding, J]]
[[Category: Maibaum, J]]
[[Category: Mainolfi, N]]
[[Category: Mainolfi, N]]
[[Category: Maibaum, J]]
[[Category: Mogi, M]]
[[Category: Liao, S.-M]]
[[Category: Powers, J]]
[[Category: Prentiss, M]]
[[Category: Ramage, P]]
[[Category: Ramqaj, R]]
[[Category: Schubart, A]]
[[Category: Sedrani, R]]
[[Category: Sedrani, R]]
[[Category: Ramage, P]]
[[Category: Sellner, H]]
[[Category: Mac Sweeney, A]]
[[Category: Serrano-Wu, M]]
[[Category: Forster, C]]
[[Category: Sirockin, F]]
[[Category: Smith, T M]]
[[Category: Solovay, C]]
[[Category: Solovay, C]]
[[Category: Adams, C.M]]
[[Category: Sweeney, A Mac]]
[[Category: Serrano-Wu, M]]
[[Category: Valeur, E]]
[[Category: Prentiss, M]]
[[Category: Vogg, B]]
[[Category: Wiesmann, C]]
[[Category: Yang, L]]
[[Category: Yang, L]]
[[Category: Erbel, P]]
[[Category: Zhang, C]]
[[Category: Zhang, C]]
[[Category: Smith, T.M]]
[[Category: Complement immune]]
[[Category: Ferrara, L]]
[[Category: Hydrolase]]
[[Category: Gradoux, N]]
[[Category: Inhibitor]]
[[Category: De Erkenez, A]]

Revision as of 09:53, 4 March 2020

Complement factor B in complex with (S)-5,7-Dimethyl-4-((2-phenylpiperidin-1-yl)methyl)-1H-indoleComplement factor B in complex with (S)-5,7-Dimethyl-4-((2-phenylpiperidin-1-yl)methyl)-1H-indole

Structural highlights

6t8v is a 2 chain structure. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Activity:Alternative-complement-pathway C3/C5 convertase, with EC number 3.4.21.47
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

[CFAB_HUMAN] Defects in CFB are a cause of susceptibility to hemolytic uremic syndrome atypical type 4 (AHUS4) [MIM:612924]. An atypical form of hemolytic uremic syndrome. It is a complex genetic disease characterized by microangiopathic hemolytic anemia, thrombocytopenia, renal failure and absence of episodes of enterocolitis and diarrhea. In contrast to typical hemolytic uremic syndrome, atypical forms have a poorer prognosis, with higher death rates and frequent progression to end-stage renal disease. Note=Susceptibility to the development of atypical hemolytic uremic syndrome can be conferred by mutations in various components of or regulatory factors in the complement cascade system. Other genes may play a role in modifying the phenotype.[1] [2]

Function

[CFAB_HUMAN] Factor B which is part of the alternate pathway of the complement system is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. It has also been implicated in proliferation and differentiation of preactivated B-lymphocytes, rapid spreading of peripheral blood monocytes, stimulation of lymphocyte blastogenesis and lysis of erythrocytes. Ba inhibits the proliferation of preactivated B-lymphocytes.

Publication Abstract from PubMed

The alternative pathway (AP) of the complement system is a key contributor to the pathogenesis of several human diseases including age-related macular degeneration, paroxysmal nocturnal hemoglobinuria (PNH), atypical hemolytic uremic syndrome (aHUS), and various glomerular diseases. The serine protease factor B (FB) is a key node in the AP and is integral to the formation of C3 and C5 convertase. Despite the prominent role of FB in the AP, selective orally bioavailable inhibitors, beyond our own efforts, have not been reported previously. Herein we describe in more detail our efforts to identify FB inhibitors by high-throughput screening (HTS) and leveraging insights from several X-ray cocrystal structures during optimization efforts. This work culminated in the discovery of LNP023 (41), which is currently being evaluated clinically in several diverse AP mediated indications.

Discovery of 4-((2S,4S)-4-Ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)be nzoic Acid (LNP023), a Factor B Inhibitor Specifically Designed To Be Applicable to Treating a Diverse Array of Complement Mediated Diseases.,Mainolfi N, Ehara T, Karki RG, Anderson K, Mac Sweeney A, Liao SM, Argikar UA, Jendza K, Zhang C, Powers J, Klosowski DW, Crowley M, Kawanami T, Ding J, April M, Forster C, Serrano-Wu M, Capparelli M, Ramqaj R, Solovay C, Cumin F, Smith TM, Ferrara L, Lee W, Long D, Prentiss M, De Erkenez A, Yang L, Liu F, Sellner H, Sirockin F, Valeur E, Erbel P, Ostermeier D, Ramage P, Gerhartz B, Schubart A, Flohr S, Gradoux N, Feifel R, Vogg B, Wiesmann C, Maibaum J, Eder J, Sedrani R, Harrison RA, Mogi M, Jaffee BD, Adams CM J Med Chem. 2020 Feb 19. doi: 10.1021/acs.jmedchem.9b01870. PMID:32073845[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

  1. Goicoechea de Jorge E, Harris CL, Esparza-Gordillo J, Carreras L, Arranz EA, Garrido CA, Lopez-Trascasa M, Sanchez-Corral P, Morgan BP, Rodriguez de Cordoba S. Gain-of-function mutations in complement factor B are associated with atypical hemolytic uremic syndrome. Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):240-5. Epub 2006 Dec 20. PMID:17182750 doi:10.1073/pnas.0603420103
  2. Maga TK, Nishimura CJ, Weaver AE, Frees KL, Smith RJ. Mutations in alternative pathway complement proteins in American patients with atypical hemolytic uremic syndrome. Hum Mutat. 2010 Jun;31(6):E1445-60. doi: 10.1002/humu.21256. PMID:20513133 doi:10.1002/humu.21256
  3. Mainolfi N, Ehara T, Karki RG, Anderson K, Mac Sweeney A, Liao SM, Argikar UA, Jendza K, Zhang C, Powers J, Klosowski DW, Crowley M, Kawanami T, Ding J, April M, Forster C, Serrano-Wu M, Capparelli M, Ramqaj R, Solovay C, Cumin F, Smith TM, Ferrara L, Lee W, Long D, Prentiss M, De Erkenez A, Yang L, Liu F, Sellner H, Sirockin F, Valeur E, Erbel P, Ostermeier D, Ramage P, Gerhartz B, Schubart A, Flohr S, Gradoux N, Feifel R, Vogg B, Wiesmann C, Maibaum J, Eder J, Sedrani R, Harrison RA, Mogi M, Jaffee BD, Adams CM. Discovery of 4-((2S,4S)-4-Ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)be nzoic Acid (LNP023), a Factor B Inhibitor Specifically Designed To Be Applicable to Treating a Diverse Array of Complement Mediated Diseases. J Med Chem. 2020 Feb 19. doi: 10.1021/acs.jmedchem.9b01870. PMID:32073845 doi:http://dx.doi.org/10.1021/acs.jmedchem.9b01870

6t8v, resolution 2.29Å

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