Flaps Morph for HIV Protease: Difference between revisions
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===YouTube=== | ===YouTube=== | ||
*[https://www.youtube.com/watch?v=dDo_s6a3wcM HIV protease action]: Excellent half-minute video from the [[PDB]] simulating polyprotein entering protease active site between the flaps, polyprotein hydrolysis, and binding of saquinavir locking the protease closed, inactivating it. | *[https://www.youtube.com/watch?v=dDo_s6a3wcM HIV protease action]: Excellent half-minute video from the [[PDB]] simulating polyprotein entering protease active site between the flaps, polyprotein hydrolysis, and binding of saquinavir locking the protease closed, inactivating it. | ||
*[https://www.youtube.com/watch?v=9XfJ1NGlUxc Mechanism and Inhibition of Aspartyl Protease Enzymes] (which include HIV protease) explained by [https://www.chemistry.gatech.edu/people/evans/michael Michael Evans (Georgia Tech)]. Excellent detailed explanation of the catalytic mechanism and design of inhibitors. | |||
*[https://www.youtube.com/watch?v=lcLbmuPH4VM Wide-opening of the HIV-1 protease active site]. 50 ns all-atom molecular dynamics simulation of | *[https://www.youtube.com/watch?v=lcLbmuPH4VM Wide-opening of the HIV-1 protease active site]. 50 ns all-atom molecular dynamics simulation of | ||
*[https://www.youtube.com/watch?v=fDFNGo9UfBI Coarse-grained Brownian dynamics simulation]. 2 ns simulation shows flaps opening and substrate binding. | *[https://www.youtube.com/watch?v=fDFNGo9UfBI Coarse-grained Brownian dynamics simulation]. 2 ns simulation shows flaps opening and substrate binding. | ||