Flaps Morph for HIV Protease: Difference between revisions
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Eric Martz (talk | contribs) No edit summary |
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The [[morph]] was generated by [[Morphs#Proteopedia_PyMOL_Morpher|Proteopedia's PyMOL Morpher]]. 1tw7 was pre-aligned with 1hxw, aligning only residues 1-35. Alignment was done in the [[Jmol/Application|Jmol Java Application]] with the following script: | The [[morph]] was generated by [[Morphs#Proteopedia_PyMOL_Morpher|Proteopedia's PyMOL Morpher]]. 1tw7 was pre-aligned with 1hxw, aligning only residues 1-35. Alignment was done in the [[Jmol/Application|Jmol Java Application]] with the following script: | ||
<pre>load =1hxw | <pre>load =1hxw # "=" means load from RCSB PDB. | ||
load append =1tw7 | load append =1tw7 # add this model rather than replacing the previously loaded model. | ||
frame all | frame all # display both models. | ||
background white | background white | ||
trace only | trace only | ||
color polymer | color polymer | ||
delay 2.0 | delay 2.0 | ||
compare {2.1} {1.1} subset {*.ca} atoms {1-35} {1-35} rotate translate 2.0 | compare {2.1} {1.1} subset {*.ca} atoms {1-35} {1-35} rotate translate 2.0 # moves model 2 to align with model 1 | ||
select 2.1 | select 2.1 # "2.1" is the second model loaded | ||
write 1tw7-aligned-to-1hxw.pdb</pre> | write 1tw7-aligned-to-1hxw.pdb</pre> | ||