Succinate Dehydrogenase: Difference between revisions
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Since succinate dehydrogenase possesses multiple active sites that catalyze two different reactions, two classes of inhibitors function on the enzyme. The first class, which includes succinate analogs--both naturally-occuring TCA cycle intermediates like malate and oxaloacetate and the synthetic analog, malonate--contains some of the strongest succinate dehydrogenase inhibitors. The second class of inhibitors, which includes the ubiquinone analogs thenoyltrifluoroacetone and carboxin, binds to the ubiquinone active site and prevents reduction of the substrate<ref>PMID:17916065</ref>. | Since succinate dehydrogenase possesses multiple active sites that catalyze two different reactions, two classes of inhibitors function on the enzyme. The first class, which includes succinate analogs--both naturally-occuring TCA cycle intermediates like malate and oxaloacetate and the synthetic analog, malonate--contains some of the strongest succinate dehydrogenase inhibitors. The second class of inhibitors, which includes the ubiquinone analogs thenoyltrifluoroacetone and carboxin, binds to the ubiquinone active site and prevents reduction of the substrate<ref>PMID:17916065</ref>. | ||
==3D structures of succinate dehydrogenase== | |||
[[Succinate dehydrogenase 3D structures]] | |||
</StructureSection> | </StructureSection> | ||
==3D structures of succinate dehydrogenase== | ==3D structures of succinate dehydrogenase== | ||
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*Succinate dehydrogenase quaternary complexes | *Succinate dehydrogenase quaternary complexes | ||
**[[3aef]], [[1zoy]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits - pig<br /> | |||
**[[2h88]] - cSDH flavoprotein + IP + cytochrome B subunits - chicken<br /> | |||
**[[3vra]], [[3vr8]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits – pig roundworm<br /> | |||
**[[2lm4]] – SDH assembly factor subunit 5 – yeast – NMR<br /> | |||
**[[2wdv]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits – ''Escherichia coli''<br /> | **[[2wdv]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits – ''Escherichia coli''<br /> | ||
**[[6c12]] - EcSDH flavoprotein + FAD assembly factor Sdhe<br /> | **[[6c12]] - EcSDH flavoprotein + FAD assembly factor Sdhe<br /> | ||
**[[2wp9]] - EcSDH flavoprotein + Fe-S protein (mutant) + cytochrome B-556 + membrane anchor protein subunits<br /> | **[[2wp9]] - EcSDH flavoprotein + Fe-S protein (mutant) + cytochrome B-556 + membrane anchor protein subunits<br /> | ||
**[[2ws3]], [[2wu2]], [[2wu5]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits (mutant)<br /> | **[[2ws3]], [[2wu2]], [[2wu5]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits (mutant)<br /> | ||
**[[ | **[[5xmj]] - SDHFe-S protein subunit + fumarate reductase + quinol – ''Desulfovibrio gigas''<br /> | ||
*Succinate | *Succinate dehydrogenase higher complexes | ||
**[[3abv]], [[3ae1]], [[3ae2]], [[3ae3]], [[3ae4]], [[3ae5]], [[3ae6]], [[3ae7]], [[3ae8]], [[3ae9]], [[3aea]], [[3aeb]], [[3aec]], [[3aed]], [[3aeg]], [[4ytp]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + benzamide derivative<br /> | **[[3abv]], [[3ae1]], [[3ae2]], [[3ae3]], [[3ae4]], [[3ae5]], [[3ae6]], [[3ae7]], [[3ae8]], [[3ae9]], [[3aea]], [[3aeb]], [[3aec]], [[3aed]], [[3aeg]], [[4ytp]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + benzamide derivative<br /> | ||
**[[3aee]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + | **[[3aee]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + ligand<br /> | ||
**[[3sfd]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + oxalacetate + pentachlorophenol<br /> | |||
**[[3sfe]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + oxalacetate + thiabendazole<br /> | |||
**[[1zp0]] - pSDH flavoprotein + Fe-S protein + cytochrome B subunits + thenoyltrifluoroactone + nitropropionate<br /> | |||
**[[1yq3]] - cSDH flavoprotein + IP + cytochrome B subunits + ubiquinone + oxalacetate<br /> | |||
**[[1yq4]] - cSDH flavoprotein + IP + cytochrome B subunits + ubiquinone + nitropropionate<br /> | |||
**[[2fbw]], [[2wqy]] - cSDH flavoprotein + IP + cytochrome B subunits + carboxin<br /> | **[[2fbw]], [[2wqy]] - cSDH flavoprotein + IP + cytochrome B subunits + carboxin<br /> | ||
**[[6myu]], [[6myr]], [[6myt]], [[6mys]], [[6myq]], [[6myp]], [[6myo]] - cSDH flavoprotein subunit + Fe-S protein subunit + cytochrome B subunit + ligand<br /> | |||
**[[2h89]] - cSDH flavoprotein + IP + cytochrome B subunits + malonate<br /> | **[[2h89]] - cSDH flavoprotein + IP + cytochrome B subunits + malonate<br /> | ||
**[[3vr9]], [[4yxd]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + | **[[3vr9]], [[4yxd]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + ligand<br /> | ||
**[[4ysx]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + inhibitor<br /> | **[[4ysx]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + inhibitor<br /> | ||
**[[4ysy]], [[4ysz]], [[4yt0]], [[4ytm]], [[4ytn]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + benzamide derivative<br /> | **[[4ysy]], [[4ysz]], [[4yt0]], [[4ytm]], [[4ytn]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + benzamide derivative<br /> | ||
**[[5c3j]], [[5c2t]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + ubiquinone derivative<br /> | **[[5c3j]], [[5c2t]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + ubiquinone derivative<br /> | ||
**[[ | **[[3vrb]] - prSDH flavoprotein + Fe-S protein + cytochrome B subunits + ligand + fumarate<br /> | ||
**[[ | **[[1nek]] – EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits + ubiquinone<br /> | ||
**[[ | **[[1nen]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits + dinitrophenol-17<br /> | ||
**[[ | **[[2acz]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits + atpenin<br /> | ||
**[[ | **[[2wdq]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits + carboxin<br /> | ||
**[[ | **[[2wdr]] - EcSDH flavoprotein + Fe-S protein + cytochrome B-556 + membrane anchor protein subunits + pentachlorophenol<br /> | ||
}} | }} | ||
==References== | ==References== | ||
<references/> | <references/> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] |