2vc6: Difference between revisions

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==Structure of MosA from S. meliloti with pyruvate bound==
==Structure of MosA from S. meliloti with pyruvate bound==
<StructureSection load='2vc6' size='340' side='right' caption='[[2vc6]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='2vc6' size='340' side='right'caption='[[2vc6]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[2vc6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VC6 FirstGlance]. <br>
<table><tr><td colspan='2'>[[2vc6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VC6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VC6 FirstGlance]. <br>
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[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
[[Category: Atcc 9930]]
[[Category: Atcc 9930]]
[[Category: Large Structures]]
[[Category: Delbaere, L T.J]]
[[Category: Delbaere, L T.J]]
[[Category: Nienaber, K H]]
[[Category: Nienaber, K H]]

Revision as of 19:59, 29 January 2020

Structure of MosA from S. meliloti with pyruvate boundStructure of MosA from S. meliloti with pyruvate bound

Structural highlights

2vc6 is a 2 chain structure with sequence from Atcc 9930. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
NonStd Res:
Activity:4-hydroxy-tetrahydrodipicolinate synthase, with EC number 4.3.3.7
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

MosA is an enzyme from Sinorhizobium meliloti L5-30, a beneficial soil bacterium that forms a symbiotic relationship with leguminous plants. MosA was proposed to catalyze the conversion of scyllo-inosamine to 3-O-methyl-scyllo-inosamine (compounds known as rhizopines), despite the MosA sequence showing a strong resemblance to dihydrodipicolinate synthase (DHDPS) sequences rather than to methyltransferases. Our laboratory has already shown that MosA is an efficient catalyst of the DHDPS reaction. Here we report the structure of MosA, solved to 1.95 A resolution, which resembles previously reported DHDPS structures. In this structure Lys161 forms a Schiff base adduct with pyruvate, consistent with the DHDPS mechanism. We have synthesized both known rhizopines and investigated their ability to interact with MosA in the presence and absence of methyl donors. No MosA-catalyzed methyltransferase activity is observed in the presence of scyllo-inosamine and S-adenosylmethionine (SAM). 2-Oxobutyrate can form a Schiff base with MosA, acting as a competitive inhibitor of MosA-catalyzed dihydrodipicolinate synthesis. It can be trapped on the enzyme by reaction with sodium borohydride, but does not act as a methyl donor. The presence of rhizopines does not affect the kinetics of dihydrodipicolinate synthesis. Isothermal titration calorimetry (ITC) shows no apparent interaction of MosA with rhizopines and SAM. Similar experiments with pyruvate as titrant demonstrate that the reversible Schiff base formation is largely entropically driven. This is the first use of ITC to study Schiff base formation between an enzyme and its substrate.

Structural, functional and calorimetric investigation of MosA, a dihydrodipicolinate synthase from Sinorhizobium meliloti l5-30, does not support involvement in rhizopine biosynthesis.,Phenix CP, Nienaber K, Tam PH, Delbaere LT, Palmer DR Chembiochem. 2008 Jul 2;9(10):1591-602. PMID:18536061[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

See Also

References

  1. Phenix CP, Nienaber K, Tam PH, Delbaere LT, Palmer DR. Structural, functional and calorimetric investigation of MosA, a dihydrodipicolinate synthase from Sinorhizobium meliloti l5-30, does not support involvement in rhizopine biosynthesis. Chembiochem. 2008 Jul 2;9(10):1591-602. PMID:18536061 doi:10.1002/cbic.200700569

2vc6, resolution 1.95Å

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